Mammalian phylogenomics comes of age

被引：259

作者：

Murphy, WJ

Pevzner, PA

O'Brien, SJ

机构：

[1] NCI, Lab Genom Divers, SAIC Frederick, Basic Res Lab, Frederick, MD 21702 USA

[2] Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA USA

[3] NCI, Lab Genom Divers, Frederick, MD 21702 USA

来源：

TRENDS IN GENETICS | 2004年 / 20卷 / 12期

关键词：

D O I：

10.1016/j.tig.2004.09.005

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The relatively new field of phylogenomics is beginning to reveal the potential of genomic data for evolutionary studies. As the cost of whole genome sequencing falls, anticipation of complete genome sequences from divergent species, reflecting the major lineages of modern mammals, is no longer a distant dream. In this article, we describe how comparative genomic data from mammals is progressing to resolve long-standing phylogenetic controversies, to refine dogma on how chromosomes evolve and to guide annotation of human and other vertebrate genomes.

引用

收藏

页码：631 / 639

页数：9

相关论文

共 86 条

[61]

Pevzner P., 2000, COMPUTATIONAL MOL BI

[62] Sequence gaps join mice and men: Phylogenetic evidence from deletions in two proteins [J].

Poux, C ;

van Rheede, T ;

Madsen, O ;

de Jong, WW .

MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (11) :2035-2037

[63] Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping [J].

Raudsepp, T ;

Lee, EJ ;

Kata, SR ;

Brinkmeyer, C ;

Mickelson, JR ;

Skow, LC ;

Womack, JE ;

Chowdhary, BP .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (08) :2386-2391

[64] Reconstruction of the ancestral karyotype of eutherian mammals [J].

Richard, F ;

Lombard, M ;

Dutrillaux, B .

CHROMOSOME RESEARCH, 2003, 11 (06) :605-618

[65] Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora [J].

Robinson, TJ ;

Fu, B ;

Ferguson-Smith, MA ;

Yang, F .

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2004, 271 (1547) :1477-1484

[66]

Sankoff David, 1997, LECT NOTES COMPUTER, P251

[67] PipMaker - A Web server for aligning two genomic DNA sequences [J].

Schwartz, S ;

Zhang, Z ;

Frazer, KA ;

Smit, A ;

Riemer, C ;

Bouck, J ;

Gibbs, R ;

Hardison, R ;

Miller, W .

GENOME RESEARCH, 2000, 10 (04) :577-586

[68] Endemic African mammals shake the phylogenetic tree [J].

Springer, MS ;

Cleven, GC ;

Madsen, O ;

deJong, WW ;

Waddell, VG ;

Amrine, HM ;

Stanhope, MJ .

NATURE, 1997, 388 (6637) :61-64

[69] Placental mammal diversification and the Cretaceous-Tertiary boundary [J].

Springer, MS ;

Murphy, WJ ;

Eizirik, E ;

O'Brien, SJ .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (03) :1056-1061

[70] The interphotoreceptor retinoid binding protein gene in therian mammals: Implications for higher level relationships and evidence for loss of function in the marsupial mole [J].

Springer, MS ;

Burk, A ;

Kavanagh, JR ;

Waddell, VG ;

Stanhope, MJ .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (25) :13754-13759

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