Kinetic and Structural Insights into the Mechanism of AMPylation by VopS Fic Domain

被引:72
作者
Luong, Phi
Kinch, Lisa N. [2 ]
Brautigam, Chad A. [3 ]
Grishin, Nick V. [2 ,3 ]
Tomchick, Diana R. [3 ]
Orth, Kim [1 ]
机构
[1] Univ Texas SW Med Ctr Dallas, Dept Mol Biol, Dallas, TX 75390 USA
[2] Univ Texas SW Med Ctr Dallas, Howard Hughes Med Inst, Dallas, TX 75390 USA
[3] Univ Texas SW Med Ctr Dallas, Dept Biochem, Dallas, TX 75390 USA
基金
美国国家卫生研究院;
关键词
VIBRIO-PARAHAEMOLYTICUS; AUTOPHAGY; PROTEINS; BINDING; MODEL;
D O I
10.1074/jbc.M110.114884
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The bacterial pathogen Vibrio parahemeolyticus manipulates host signaling pathways during infections by injecting type III effectors into the cytoplasm of the target cell. One of these effectors, VopS, blocks actin assembly by AMPylation of a conserved threonine residue in the switch 1 region of Rho GTPases. The modified GTPases are no longer able to interact with downstream effectors due to steric hindrance by the covalently linked AMP moiety. Herein we analyze the structure of VopS and its evolutionarily conserved catalytic residues. Steady-state analysis of VopS mutants provides kinetic understanding on the functional role of each residue for AMPylation activity by the Fic domain. Further mechanistic analysis of VopS with its two substrates, ATP and Cdc42, demonstrates that VopS utilizes a sequential mechanism to AMPylate Rho GTPases. Discovery of a ternary reaction mechanism along with structural insight provides critical groundwork for future studies for the family of AMPylators that modify hydroxyl-containing residues with AMP.
引用
收藏
页码:20155 / 20163
页数:9
相关论文
共 30 条
[1]   PHENIX:: building new software for automated crystallographic structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW ;
Hung, LW ;
Ioerger, TR ;
McCoy, AJ ;
Moriarty, NW ;
Read, RJ ;
Sacchettini, JC ;
Sauter, NK ;
Terwilliger, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1948-1954
[2]   Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras [J].
Ahmadian, MR ;
Stege, P ;
Scheffzek, K ;
Wittinghofer, A .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (09) :686-689
[3]   Tipping the balance by manipulating post-translational modifications [J].
Broberg, Christopher A. ;
Orth, Kim .
CURRENT OPINION IN MICROBIOLOGY, 2010, 13 (01) :34-40
[4]   Vibrio parahaemolyticus orchestrates a multifaceted host cell infection by induction of autophagy, cell rounding, and then cell lysis [J].
Burdette, Dara L. ;
Yarbrough, Melanie L. ;
Orvedahl, Anthony ;
Gilpin, Christopher J. ;
Orth, Kim .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (34) :12497-12502
[5]   Vibrio VopQ induces PI3-kinase-independent autophagy and antagonizes phagocytosis [J].
Burdette, Dara L. ;
Seemann, Joachim ;
Orth, Kim .
MOLECULAR MICROBIOLOGY, 2009, 73 (04) :639-649
[6]   Vibrio parahaemolyticus inhibition of Rho family GTPase activation requires a functional chromosome I type III secretion system [J].
Casselli, Timothy ;
Lynch, Tarah ;
Southward, Carolyn M. ;
Jones, Bryan W. ;
DeVinney, Rebekah .
INFECTION AND IMMUNITY, 2008, 76 (05) :2202-2211
[7]   Kinetic mechanism of the p38-α MAP kinase:: Phosphoryl transfer to synthetic peptides [J].
Chen, GJ ;
Porter, MD ;
Bristol, JR ;
Fitzgibbon, MJ ;
Pazhanisamy, S .
BIOCHEMISTRY, 2000, 39 (08) :2079-2087
[8]   Miscellaneous algorithms for density modification [J].
Cowtan, K ;
Main, P .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1998, 54 :487-493
[9]   Crystal structure of the Fic (Filamentation Induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution [J].
Das, Debanu ;
Krishna, S. Sri ;
McMullan, Daniel ;
Miller, Mitchell D. ;
Xu, Qingping ;
Abdubek, Polat ;
Acosta, Claire ;
Astakhova, Tamara ;
Axelrod, Herbert L. ;
Burra, Prasad ;
Carlton, Dennis ;
Chiu, Hsiu-Ju ;
Clayton, Thomas ;
Deller, Marc C. ;
Duan, Lian ;
Elias, Ylva ;
Elsliger, Marc-Andre ;
Ernst, Dustin ;
Feuerhelm, Julie ;
Grzechnik, Anna ;
Grzechnik, Slawomir K. ;
Hale, Joanna ;
Han, Gye Won ;
Jaroszewski, Lukasz ;
Jin, Kevin K. ;
Klock, Heath E. ;
Knuth, Mark W. ;
Kozbial, Piotr ;
Kumar, Abhinav ;
Marciano, David ;
Morse, Andrew T. ;
Murphy, Kevin D. ;
Nigoghossian, Edward ;
Okach, Linda ;
Oommachen, Silvya ;
Paulsen, Jessica ;
Reyes, Ron ;
Rife, Christopher L. ;
Sefcovic, Natasha ;
Tien, Henry ;
Trame, Christine B. ;
Trout, Christina V. ;
van den Bedem, Henry ;
Weekes, Dana ;
White, Aprilfawn ;
Hodgson, Keith O. ;
Wooley, John ;
Deacon, Ashley M. ;
Godzik, Adam ;
Lesley, Scott A. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2009, 75 (01) :264-271
[10]   MolProbity: all-atom contacts and structure validation for proteins and nucleic acids [J].
Davis, Ian W. ;
Leaver-Fay, Andrew ;
Chen, Vincent B. ;
Block, Jeremy N. ;
Kapral, Gary J. ;
Wang, Xueyi ;
Murray, Laura W. ;
Arendall, W. Bryan, III ;
Snoeyink, Jack ;
Richardson, Jane S. ;
Richardson, David C. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W375-W383