Feedback regulation in the lactose operon: A mathematical modeling study and comparison with experimental data

被引:149
作者
Yildirim, N
Mackey, MC
机构
[1] McGill Univ, Ctr Nonlinear Dynam, Dept Physiol, Montreal, PQ H4X 2C1, Canada
[2] McGill Univ, Ctr Nonlinear Dynam, Dept Math & Phys, Montreal, PQ H4X 2C1, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
D O I
10.1016/S0006-3495(03)70013-7
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented. This model takes into account the dynamics of the permease facilitating the internalization of external lactose; internal lactose; beta-galactosidase, which is involved in the conversion of lactose to allolactose, glucose and galactose; the allolactose interactions with the lac repressor; and mRNA. The final model consists of five nonlinear differential delay equations with delays due to the transcription and translation process. We have paid particular attention to the estimation of the parameters in the model. We have tested our model against two sets of beta-galactosidase activity versus time data, as well as a set of data on beta-galactosidase activity during periodic phosphate feeding. In all three cases we find excellent agreement between the data and the model predictions. Analytical and numerical studies also indicate that for physiologically realistic values of the external lactose and the bacterial growth rate, a regime exists where there may be bistable steady-state behavior, and that this corresponds to a cusp bifurcation in the model dynamics.
引用
收藏
页码:2841 / 2851
页数:11
相关论文
共 60 条
[41]  
SAIER MH, 1976, J BIOL CHEM, V251, P6606
[42]   Dynamic behavior in mathematical models of the tryptophan operon [J].
Santillán, M ;
Mackey, MC .
CHAOS, 2001, 11 (01) :261-268
[43]   Dynamic regulation of the tryptophan operon:: A modeling study and comparison with experimental data [J].
Santillán, M ;
Mackey, MC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (04) :1364-1369
[44]   Design of gene circuitry by natural selection:: analysis of the lactose catabolic system in Escherichia coli [J].
Savageau, MA .
BIOCHEMICAL SOCIETY TRANSACTIONS, 1999, 27 (02) :264-270
[45]   A HOPF-BIFURCATION IN SINGLE-LOOP POSITIVE-FEEDBACK SYSTEMS [J].
SELGRADE, JF .
QUARTERLY OF APPLIED MATHEMATICS, 1982, 40 (03) :347-351
[46]   MATHEMATICAL-ANALYSIS OF A CELLULAR CONTROL PROCESS WITH POSITIVE FEEDBACK [J].
SELGRADE, JF .
SIAM JOURNAL ON APPLIED MATHEMATICS, 1979, 36 (02) :219-229
[47]   DYNAMIC ANALYSIS OF GENETIC-CONTROL AND REGULATION OF AMINO-ACID SYNTHESIS - THE TRYPTOPHAN OPERON IN ESCHERICHIA-COLI [J].
SEN, AK ;
LIU, WM .
BIOTECHNOLOGY AND BIOENGINEERING, 1990, 35 (02) :185-194
[48]  
SHAMPINE LF, 2000, SOLVING DDES MATLAB
[49]   THEORETICAL-STUDY OF TRYPTOPHAN OPERON - APPLICATION IN MICROBIAL TECHNOLOGY [J].
SINHA, S .
BIOTECHNOLOGY AND BIOENGINEERING, 1988, 31 (02) :117-124
[50]   CODON USAGE DETERMINES TRANSLATION RATE IN ESCHERICHIA-COLI [J].
SORENSEN, MA ;
KURLAND, CG ;
PEDERSEN, S .
JOURNAL OF MOLECULAR BIOLOGY, 1989, 207 (02) :365-377