GEPAS:: a web-based resource for microarray gene expression data analysis

被引：144

作者：

Herrero, J ^{[1
]}

Al-Shahrour, F ^{[1
]}

Díaz-Uriarte, R ^{[1
]}

Mateos, A ^{[1
]}

Vaquerizas, JM ^{[1
]}

Santoyo, J ^{[1
]}

Dopazo, J ^{[1
]}

机构：

[1] CNIO, Bioinformat Unit, Madrid 28029, Spain

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 13期

关键词：

D O I：

10.1093/nar/gkg591

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We present a web-based pipeline for microarray gene expression profile analysis, GEPAS, which stands for Gene Expression Profile Analysis Suite (http://gepas.bioinfo.cnio.es). GEPAS is composed of different interconnected modules which include tools for data pre-processing, two-conditions comparison, unsupervised and supervised clustering (which include some of the most popular methods as well as home made algorithms) and several tests for differential gene expression among different classes, continuous variables or survival analysis. A multiple purpose tool for data mining, based on Gene Ontology, is also linked to the tools, which constitutes a very convenient way of analysing clustering results. On-line tutorials are available from our main web server (http://bioinfo.cnio.es).

引用

页码：3461 / 3467

页数：7

共 27 条

[1]

[Anonymous], 1993, Resampling-based multiple testing: Examples and methods for P-value adjustment

[2] Gene Ontology: tool for the unification of biology [J].