GenBank

被引:399
作者
Benson, DA [1 ]
Karsch-Mizrachi, I [1 ]
Lipman, DJ [1 ]
Ostell, J [1 ]
Wheeler, DL [1 ]
机构
[1] Natl Lib Med, Dept HHS, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1093/nar/gki063
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
GenBank(C) is a comprehensive database that contains publicly available DNA sequences for more than 165000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based Bankit or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in the UK and the DNA Data Bank of Japan helps to ensure worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, go to the NCBI Homepage at http://www.ncbi.nim.nih.gov.
引用
收藏
页码:D34 / D38
页数:5
相关论文
共 11 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   GenBank: update [J].
Benson, DA ;
Karsch-Mizrachi, I ;
Lipman, DJ ;
Ostell, J ;
Wheeler, DL .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D23-D26
[3]   DBEST - DATABASE FOR EXPRESSED SEQUENCE TAGS [J].
BOGUSKI, MS ;
LOWE, TMJ ;
TOLSTOSHEV, CM .
NATURE GENETICS, 1993, 4 (04) :332-333
[4]  
KANS JA, 2001, BIOINFORMATICS PRACT, P65
[5]   Functional annotation of a full-length mouse cDNA collection [J].
Kawai, J ;
Shinagawa, A ;
Shibata, K ;
Yoshino, M ;
Itoh, M ;
Ishii, Y ;
Arakawa, T ;
Hara, A ;
Fukunishi, Y ;
Konno, H ;
Adachi, J ;
Fukuda, S ;
Aizawa, K ;
Izawa, M ;
Nishi, K ;
Kiyosawa, H ;
Kondo, S ;
Yamanaka, I ;
Saito, T ;
Okazaki, Y ;
Gojobori, T ;
Bono, H ;
Kasukawa, T ;
Saito, R ;
Kadota, K ;
Matsuda, H ;
Ashburner, M ;
Batalov, S ;
Casavant, T ;
Fleischmann, W ;
Gaasterland, T ;
Gissi, C ;
King, B ;
Kochiwa, H ;
Kuehl, P ;
Lewis, S ;
Matsuo, Y ;
Nikaido, I ;
Pesole, G ;
Quackenbush, J ;
Schriml, LM ;
Staubli, F ;
Suzuki, R ;
Tomita, M ;
Wagner, L ;
Washio, T ;
Sakai, K ;
Okido, T ;
Furuno, M ;
Aono, H .
NATURE, 2001, 409 (6821) :685-690
[6]   The EMBL nucleotide sequence database [J].
Kulikova, T ;
Aldebert, P ;
Althorpe, N ;
Baker, W ;
Bates, K ;
Browne, P ;
van den Broek, A ;
Cochrane, G ;
Duggan, K ;
Eberhardt, R ;
Faruque, N ;
Garcia-Pastor, M ;
Harte, N ;
Kanz, C ;
Leinonen, R ;
Lin, Q ;
Lombard, V ;
Lopez, R ;
Mancuso, R ;
McHale, M ;
Nardone, F ;
Silventoinen, V ;
Stoehr, P ;
Stoesser, G ;
Tuli, MA ;
Tzouvara, K ;
Vaughan, R ;
Wu, D ;
Zhu, WM ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D27-D30
[7]   CDD: a conserved domain database for protein classification [J].
Marchler-Bauer, A ;
Anderson, JB ;
Cherukuri, PF ;
DeWweese-Scott, C ;
Geer, LY ;
Gwadz, M ;
He, SQ ;
Hurwitz, DI ;
Jackson, JD ;
Ke, ZX ;
Lanczycki, CJ ;
Liebert, CA ;
Liu, CL ;
Lu, F ;
Marchler, GH ;
Mullokandov, M ;
Shoemaker, BA ;
Simonyan, V ;
Song, JS ;
Thiessen, PA ;
Yamashita, RA ;
Yin, JJ ;
Zhang, DC ;
Bryant, SH .
NUCLEIC ACIDS RESEARCH, 2005, 33 :D192-D196
[8]   DDBJ in the stream of various biological data [J].
Miyazaki, S ;
Sugawara, H ;
Ikeo, K ;
Gojobori, T ;
Tateno, Y .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D31-D34
[9]   GENOMIC SEQUENCE SAMPLING - A STRATEGY FOR HIGH-RESOLUTION SEQUENCE-BASED PHYSICAL MAPPING OF COMPLEX GENOMES [J].
SMITH, MW ;
HOLMSEN, AL ;
WEI, YH ;
PETERSON, M ;
EVANS, GA .
NATURE GENETICS, 1994, 7 (01) :40-47
[10]   Database resources of the National Center for Biotechnology Information [J].
Wheeler, DL ;
Barrett, T ;
Benson, DA ;
Bryant, SH ;
Canese, K ;
Church, DM ;
Di Cuccio, M ;
Edgar, R ;
Federhen, S ;
Helmberg, W ;
Kenton, DL ;
Khovayko, O ;
Lipman, DJ ;
Madden, TL ;
Maglott, DR ;
Ostell, J ;
Pontius, JU ;
Pruitt, KD ;
Schuler, GD ;
Schriml, LM ;
Sequeira, E ;
Sherry, ST ;
Sirotkin, K ;
Starchenko, G ;
Suzek, TO ;
Tatusov, R ;
Tatusova, TA ;
Wagner, L ;
Yaschenko, E .
NUCLEIC ACIDS RESEARCH, 2005, 33 :D39-D45