Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits

被引:36
作者
Barat, Chandana
Datta, Partha P.
Raj, V. Samuel
Sharma, Manjuli R.
Kaji, Hicleko
Kaji, Akira
Agrawal, Rajendra K.
机构
[1] New York State Dept Hlth, Wadsworth Ctr, Dept Mol Med, Albany, NY 12201 USA
[2] Univ Penn, Sch Med, Dept Microbiol, Philadelphia, PA 19104 USA
[3] Thomas Jefferson Univ, Dept Biochem & Mol Biol, Philadelphia, PA 19107 USA
[4] SUNY Albany, Sch Publ Hlth, Dept Biomed Sci, Albany, NY 12201 USA
[5] St Xavier Coll, Dept Biotechnol, Kolkata 700016, W Bengal, India
关键词
ELONGATION-FACTOR-G; 15 ANGSTROM RESOLUTION; COLI 70S RIBOSOME; ESCHERICHIA-COLI; TRANSFER-RNA; CRYOELECTRON MICROSCOPY; CRYSTAL-STRUCTURE; EF-G; CRYO-EM; POSTTERMINATION COMPLEX;
D O I
10.1016/j.molcel.2007.06.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
After the termination step of translation, the posttermination complex (PoTC), composed of the ribosome, mRNA, and a deacylated tRNA, is processed by the concerted action of the ribosome-recycling factor (RRF), elongation factor G (EF-G), and GTP to prepare the ribosome for a fresh round of protein synthesis. However, the sequential steps of dissociation of the ribosomal subunits, and release of mRNA and deacylated tRNA from the PoTC, are unclear. Using three-dimensional cryoelectron microscopy, in conjunction with undecagold-labeled RRF, we show that RRF is capable of spontaneously moving from its initial binding site on the 70S Escherichia coli ribosome to a site exclusively on the large 50S ribosomal subunit. This movement leads to disruption of crucial intersubunit bridges and thereby to the dissociation of the two ribosomal subunits, the central event in ribosome recycling. Results of this study allow us to propose a model of ribosome recycling.
引用
收藏
页码:250 / 261
页数:12
相关论文
共 52 条
[1]   Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome:: Functional implications [J].
Agrawal, RK ;
Sharma, MR ;
Kiel, MC ;
Hirokawa, G ;
Booth, TM ;
Spahn, CMT ;
Grassucci, RA ;
Kaji, A ;
Frank, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (24) :8900-8905
[2]   Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy [J].
Agrawal, RK ;
Penczek, P ;
Grassucci, RA ;
Burkhardt, N ;
Nierhaus, KH ;
Frank, J .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (13) :8723-8729
[3]   Visualization of elongation factor G on the Escherichia coli 70S ribosome:: The mechanism of translocation [J].
Agrawal, RK ;
Penczek, P ;
Grassucci, RA ;
Frank, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :6134-6138
[4]   EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome [J].
Agrawal, RK ;
Heagle, AB ;
Penczek, P ;
Grassucci, RA ;
Frank, J .
NATURE STRUCTURAL BIOLOGY, 1999, 6 (07) :643-647
[5]   Determination of the fold of the core protein of hepatitis B virus ky electron cryomicroscopy [J].
Bottcher, B ;
Wynne, SA ;
Crowther, RA .
NATURE, 1997, 386 (6620) :88-91
[6]  
CARSON M, 1991, J APPL CRYSTALLOGR, V24, P103
[7]   Interaction of translation initiation factor 3 with the 30S ribosomal subunit [J].
Dallas, A ;
Noller, HF .
MOLECULAR CELL, 2001, 8 (04) :855-864
[8]   Interaction of the G′ domain of elongation factor G and the C-terminal domain of ribosomal protein L7/L12 during translocation as revealed by cryo-EM [J].
Datta, PP ;
Sharma, MR ;
Qi, L ;
Frank, J ;
Agrawal, RK .
MOLECULAR CELL, 2005, 20 (05) :723-731
[9]   A ratchet-like inter-subunit reorganization of the ribosome during translocation [J].
Frank, J ;
Agrawal, RK .
NATURE, 2000, 406 (6793) :318-322
[10]   Ratchet-like movements between the two ribosomal subunits: Their implications in elongation factor recognition and tRNA translocation [J].
Frank, J ;
Agrawal, RK .
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 2001, 66 :67-75