3Did: interacting protein domains of known three-dimensional structure

被引：129

作者：

Stein, A

Russell, RB

Aloy, P

机构：

[1] EMBL, D-69117 Heidelberg, Germany

[2] EMBL, European Bioinformat Inst, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2005年 / 33卷

关键词：

D O I：

10.1093/nar/gki037

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The database of 3D Interacting Domains (3did) is a collection of domain-domain interactions in proteins for which high-resolution three-dimensional structures are known. 3did exploits structural information to provide critical molecular details necessary for understanding how interactions occur. It also offers an overview of how similar in structure are interactions between different members of the same protein family. The database also contains Gene Ontology-based functional annotations and interactions between yeast proteins from large-scale interaction discovery studies. A web-based tool to query 3did is available at http://3did.embl.de.

引用

页码：D413 / D417

页数：5

共 19 条

[1] The relationship between sequence and interaction divergence in proteins
Aloy, P
Ceulemans, H
Stark, A
Russell, RB
[J]. JOURNAL OF MOLECULAR BIOLOGY, 2003, 332 (05) : 989 - 998
[2] InterPreTS: protein Interaction Prediction through Tertiary Structure
Aloy, P
Russell, RB
[J]. BIOINFORMATICS, 2003, 19 (01) : 161 - 162
[3] Interrogating protein interaction networks through structural biology
Aloy, P
Russell, RB
[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (09) : 5896 - 5901
[4] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, SF
Madden, TL
Schaffer, AA
Zhang, JH
Zhang, Z
Miller, W
Lipman, DJ
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
[5] SCOP database in 2004: refinements integrate structure and sequence family data
Andreeva, A
Howorth, D
Brenner, SE
Hubbard, TJP
Chothia, C
Murzin, AG
[J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D226 - D229
[6] Gene Ontology: tool for the unification of biology
Ashburner, M
Ball, CA
Blake, JA
Botstein, D
Butler, H
Cherry, JM
Davis, AP
Dolinski, K
Dwight, SS
Eppig, JT
Harris, MA
Hill, DP
Issel-Tarver, L
Kasarskis, A
Lewis, S
Matese, JC
Richardson, JE
Ringwald, M
Rubin, GM
Sherlock, G
[J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
[7] Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkr1065, 10.1093/nar/gkh121]
[8] The distribution and query systems of the RCSB protein data bank
Bourne, PE
Addess, KJ
Bluhm, WF
Chen, L
Deshpande, N
Feng, ZK
Fleri, W
Green, R
Merino-Ott, JC
Townsend-Merino, W
Weissig, H
Westbrook, J
Berman, HM
[J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D223 - D225
[9] Functional organization of the yeast proteome by systematic analysis of protein complexes
Gavin, AC
Bösche, M
Krause, R
Grandi, P
Marzioch, M
Bauer, A
Schultz, J
Rick, JM
Michon, AM
Cruciat, CM
Remor, M
Höfert, C
Schelder, M
Brajenovic, M
Ruffner, H
Merino, A
Klein, K
Hudak, M
Dickson, D
Rudi, T
Gnau, V
Bauch, A
Bastuck, S
Huhse, B
Leutwein, C
Heurtier, MA
Copley, RR
Edelmann, A
Querfurth, E
Rybin, V
Drewes, G
Raida, M
Bouwmeester, T
Bork, P
Seraphin, B
Kuster, B
Neubauer, G
Superti-Furga, G
[J]. NATURE, 2002, 415 (6868) : 141 - 147
[10] A protein interaction map of Drosophila melanogaster
Giot, L
Bader, JS
Brouwer, C
Chaudhuri, A
Kuang, B
Li, Y
Hao, YL
Ooi, CE
Godwin, B
Vitols, E
Vijayadamodar, G
Pochart, P
Machineni, H
Welsh, M
Kong, Y
Zerhusen, B
Malcolm, R
Varrone, Z
Collis, A
Minto, M
Burgess, S
McDaniel, L
Stimpson, E
Spriggs, F
Williams, J
Neurath, K
Ioime, N
Agee, M
Voss, E
Furtak, K
Renzulli, R
Aanensen, N
Carrolla, S
Bickelhaupt, E
Lazovatsky, Y
DaSilva, A
Zhong, J
Stanyon, CA
Finley, RL
White, KP
Braverman, M
Jarvie, T
Gold, S
Leach, M
Knight, J
Shimkets, RA
McKenna, MP
Chant, J
Rothberg, JM
[J]. SCIENCE, 2003, 302 (5651) : 1727 - 1736

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