Serial analysis of gene expression: from gene discovery to target identification

被引:46
作者
Madden, SL [1 ]
Wang, CJ [1 ]
Landes, G [1 ]
机构
[1] Genzyme Mol Oncol & Genzyme Corp, Framingham, MA 01701 USA
关键词
D O I
10.1016/S1359-6446(00)01544-0
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Serial Analysis of Gene Expression (SAGE) is a sequence-based genomics tool that features comprehensive gene discovery and quantitative gene expression capabilities. As an 'open' system, SAGE can reveal which genes are expressed and their level of expression rather than merely quantifying the expression level of a predetermined, and presently incomplete, set of genes as carried out by 'closed' system gene expression profiling platforms such as microarrays. These distinguishing attributes enable SAGE to be used as a primary discovery engine that can characterize human disease at the molecular level while illuminating potential targets and markers for therapeutic and diagnostic development, respectively.
引用
收藏
页码:415 / 425
页数:11
相关论文
共 40 条
[21]   Activation of beta-catenin-Tcf signaling in colon cancer by mutations in beta-catenin or APC [J].
Morin, PJ ;
Sparks, AB ;
Korinek, V ;
Barker, N ;
Clevers, H ;
Vogelstein, B ;
Kinzler, KW .
SCIENCE, 1997, 275 (5307) :1787-1790
[22]  
Nacht M, 1999, CANCER RES, V59, P5464
[23]   Molecular phenotype of the human oocyte by PCR-SAGE [J].
Neilson, L ;
Andalibi, A ;
Kang, D ;
Coutifaris, C ;
Strauss, JF ;
Stanton, JAL ;
Green, DPL .
GENOMICS, 2000, 63 (01) :13-24
[24]   Comprehensive transcript analysis in small quantities of mRNA by SAGE-Lite [J].
Peters, David G. ;
Kassam, Amin B. ;
Yonas, Howard ;
O'Hare, Elisa Heidrich ;
Ferrell, Robert E. ;
Brufsky, Adam M. .
NUCLEIC ACIDS RESEARCH, 1999, 27 (24)
[25]   A model for p53-induced apoptosis [J].
Polyak, K ;
Xia, Y ;
Zweier, JL ;
Kinzler, KW ;
Vogelstein, B .
NATURE, 1997, 389 (6648) :300-305
[26]   The TIGR Gene Indices: reconstruction and representation of expressed gene sequences [J].
Quackenbush, J ;
Liang, F ;
Holt, I ;
Pertea, G ;
Upton, J .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :141-145
[27]   GENE-EXPRESSION DURING PREIMPLANTATION MOUSE DEVELOPMENT [J].
ROTHSTEIN, JL ;
JOHNSON, D ;
DELOIA, JA ;
SKOWRONSKI, J ;
SOLTER, D ;
KNOWLES, B .
GENES & DEVELOPMENT, 1992, 6 (07) :1190-1201
[28]   Serial analysis of gene expression in HIV-1-infected T cell lines [J].
Ryo, A ;
Suzuki, Y ;
Ichiyama, K ;
Wakatsuki, T ;
Kondoh, N ;
Hada, A ;
Yamamoto, M ;
Yamamoto, N .
FEBS LETTERS, 1999, 462 (1-2) :182-186
[29]   Pieces of the puzzle: expressed sequence tags and the catalog of human genes [J].
Schuler, GD .
JOURNAL OF MOLECULAR MEDICINE-JMM, 1997, 75 (10) :694-698
[30]   A gene map of the human genome [J].
Schuler, GD ;
Boguski, MS ;
Stewart, EA ;
Stein, LD ;
Gyapay, G ;
Rice, K ;
White, RE ;
RodriguezTome, P ;
Aggarwal, A ;
Bajorek, E ;
Bentolila, S ;
Birren, BB ;
Butler, A ;
Castle, AB ;
Chiannilkulchai, N ;
Chu, A ;
Clee, C ;
Cowles, S ;
Day, PJR ;
Dibling, T ;
Drouot, N ;
Dunham, I ;
Duprat, S ;
East, C ;
Edwards, C ;
Fan, JB ;
Fang, N ;
Fizames, C ;
Garrett, C ;
Green, L ;
Hadley, D ;
Harris, M ;
Harrison, P ;
Brady, S ;
Hicks, A ;
Holloway, E ;
Hui, L ;
Hussain, S ;
LouisDitSully, C ;
Ma, J ;
MacGilvery, A ;
Mader, C ;
Maratukulam, A ;
Matise, TC ;
McKusick, KB ;
Morissette, J ;
Mungall, A ;
Muselet, D ;
Nusbaum, HC ;
Page, DC .
SCIENCE, 1996, 274 (5287) :540-546