Efficient gene identification and targeted gene disruption in the wheat blotch fungus Mycosphaerella graminicola using TAGKO

被引:15
作者
Adachi, K [1 ]
Nelson, GH [1 ]
Peoples, KA [1 ]
Frank, SA [1 ]
Montenegro-Chamorro, MV [1 ]
DeZwaan, TM [1 ]
Ramamurthy, L [1 ]
Shuster, JR [1 ]
Hamer, L [1 ]
Tanzer, MM [1 ]
机构
[1] Paradigm Genet Inc, Res Triangle Pk, NC 27709 USA
关键词
Mycosphaerella graminicola; Septoria wheat blotch; TAGKO; gene disruption; electroporation;
D O I
10.1007/s00294-002-0339-2
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
TAGKO (transposon-arrayed gene knockout) is a highly efficient method for gene discovery and gene function assignment in the rice blast fungus Magnaporthe grisea. Here, we report the application of genome-wide TAGKO to the wheat blotch fungus Mycosphaerella graminicola, including the successful development of electroporation-based transformation for this fungus. A M. graminicola genomic cosmid library was constructed and a pool of 250 cosmid clones was mutagenized by in vitro transposition. Sequence analysis identified 5,110 unique insertion events in the M. graminicola genome. Eleven transposon-tagged cosmid clones (TAGKO clones) were chosen and transformed into the wild-type strain by electroporation. Ten TAGKO clones out of 11 produced gene-specific mutants at a targeting frequency of 15-28%, significantly higher than that of conventional gene-disruption constructs. The remaining clone failed to produce viable mutants, thereby providing indirect evidence for the identification of an essential gene.
引用
收藏
页码:123 / 127
页数:5
相关论文
共 19 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   RELATIONSHIP OF VECTOR INSERT SIZE TO HOMOLOGOUS INTEGRATION DURING TRANSFORMATION OF NEUROSPORA-CRASSA WITH THE CLONED AM (GDH) GENE [J].
ASCH, DK ;
KINSEY, JA .
MOLECULAR AND GENERAL GENETICS, 1990, 221 (01) :37-43
[3]   Gene targeting is locus dependent in the filamentous fungus Aspergillus nidulans [J].
Bird, D ;
Bradshaw, R .
MOLECULAR & GENERAL GENETICS, 1997, 255 (02) :219-225
[4]  
Carroll A.M., 1994, FUNGAL GENET NEWSL, V41, P22, DOI [DOI 10.4148/1941-4765.1367, 10.4148/19414765.1367, DOI 10.4148/19414765.1367, 10.4148/1941-4765.1367]
[5]   A rapid method for efficient gene replacement in the filamentous fungus Aspergillus nidulans [J].
Chaveroche, Marie-Kim ;
Ghigo, Jean-Marc ;
d'Enfert, Christophe .
NUCLEIC ACIDS RESEARCH, 2000, 28 (22) :E97
[6]  
Eyal Z, 1999, SEPTORIA ON CEREALS: A STUDY OF PATHOSYSTEMS, P1
[7]   Gene discovery and gene function assignment in filamentous fungi [J].
Hamer, L ;
Adachi, K ;
Montenegro-Chamorro, MV ;
Tanzer, MM ;
Mahanty, SK ;
Lo, C ;
Tarpey, RW ;
Skalchunes, AR ;
Heiniger, RW ;
Frank, SA ;
Darveaux, BA ;
Lampe, DJ ;
Slater, TM ;
Ramamurthy, L ;
DeZwaan, TM ;
Nelson, GH ;
Shuster, JR ;
Woessner, J ;
Hamer, JE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (09) :5110-5115
[8]  
Keon J, 1998, FEMS MICROBIOL LETT, V161, P337, DOI 10.1111/j.1574-6968.1998.tb12966.x
[9]   The eukaryotic UDP-N-acetylglucosamine pyrophosphorylases -: Gene cloning, protein expression, and catalytic mechanism [J].
Mio, T ;
Yabe, T ;
Arisawa, M ;
Yamada-Okabe, H .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (23) :14392-14397
[10]   Transformation of the phytopathogen Mycosphaerella graminicola to carbendazim and hygromycin B resistance [J].
Payne, AC ;
Grosjean-Cournoyer, MC ;
Hollomon, DW .
CURRENT GENETICS, 1998, 34 (02) :100-104