Metadynamics convergence law in a multidimensional system

被引:66
作者
Crespo, Yanier [1 ,2 ]
Marinelli, Fabrizio [1 ]
Pietrucci, Fabio [1 ]
Laio, Alessandro [1 ,2 ]
机构
[1] SISSA, Int Sch Adv Studies, I-34014 Trieste, Italy
[2] Democritos CNR INFM Natl Simulat Ctr, I-34014 Trieste, Italy
来源
PHYSICAL REVIEW E | 2010年 / 81卷 / 05期
关键词
D O I
10.1103/PhysRevE.81.055701
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Metadynamics is a powerful sampling technique that uses a nonequilibrium history-dependent process to reconstruct the free-energy surface as a function of the relevant collective variables s. In Bussi et al. [Phys. Rev. Lett. 96, 090601 (2006)] it is proved that, in a Langevin process, metadynamics provides an unbiased estimate of the free energy F(s). We here study the convergence properties of this approach in a multidimensional system, with a Hamiltonian depending on several variables. Specifically, we show that in a Monte Carlo metadynamics simulation of an Ising model the time average of the history-dependent potential converge to F(s) with the same law of an umbrella sampling performed in optimal conditions (i.e., with a bias exactly equal to the negative of the free energy). Remarkably, after a short transient, the error becomes approximately independent on the filling speed, showing that even in out-of-equilibrium conditions metadynamics allows recovering an accurate estimate of F(s). These results have been obtained introducing a functional form of the history-dependent potential that avoids the onset of systematic errors near the boundaries of the free-energy landscape.
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页数:4
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共 12 条
[1]   Well-tempered metadynamics: A smoothly converging and tunable free-energy method [J].
Barducci, Alessandro ;
Bussi, Giovanni ;
Parrinello, Michele .
PHYSICAL REVIEW LETTERS, 2008, 100 (02)
[2]   Equilibrium free energies from nonequilibrium metadynamics [J].
Bussi, G ;
Laio, A ;
Parrinello, M .
PHYSICAL REVIEW LETTERS, 2006, 96 (09)
[3]   Calculating thermodynamics properties of quantum systems by a non-Markovian Monte Carlo procedure [J].
Crespo, Yanier ;
Laio, Alessandro ;
Santoro, Giuseppe E. ;
Tosatti, Erio .
PHYSICAL REVIEW E, 2009, 80 (01)
[4]   BOUNDED AND INHOMOGENEOUS ISING MODELS .I. SPECIFIC-HEAT ANOMALY OF A FINITE LATTICE [J].
FERDINAN.AE ;
FISHER, ME .
PHYSICAL REVIEW, 1969, 185 (02) :832-&
[5]   Efficient exploration of reactive potential energy surfaces using Car-Parrinello molecular dynamics [J].
Iannuzzi, M ;
Laio, A ;
Parrinello, M .
PHYSICAL REVIEW LETTERS, 2003, 90 (23) :4
[6]   Escaping free-energy minima [J].
Laio, A ;
Parrinello, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (20) :12562-12566
[7]   Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science [J].
Laio, Alessandro ;
Gervasio, Francesco L. .
REPORTS ON PROGRESS IN PHYSICS, 2008, 71 (12)
[8]   Targeting biomolecular flexibility with metadynamics [J].
Leone, Vanessa ;
Marinelli, Fabrizio ;
Carloni, Paolo ;
Parrinello, Michele .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2010, 20 (02) :148-154
[9]   NON-PHYSICAL SAMPLING DISTRIBUTIONS IN MONTE-CARLO FREE-ENERGY ESTIMATION - UMBRELLA SAMPLING [J].
TORRIE, GM ;
VALLEAU, JP .
JOURNAL OF COMPUTATIONAL PHYSICS, 1977, 23 (02) :187-199
[10]   Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram [J].
Wang, FG ;
Landau, DP .
PHYSICAL REVIEW E, 2001, 64 (05) :16