Structural insights into the avian AICAR transformylase mechanism

被引:33
作者
Wolan, DW
Greasley, SE
Beardsley, GP
Wilson, IA
机构
[1] Scripps Res Inst, Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
[3] Yale Univ, Sch Med, Dept Pharmacol & Pediat, New Haven, CT 06520 USA
关键词
D O I
10.1021/bi020505x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
ATIC encompasses both AICAR transformylase and IMP cyclohydrolase activities that are responsible for the catalysis of the penultimate and final steps of the purine de novo synthesis pathway. The formyl transfer reaction catalyzed by the AICAR Tfase domain is substantially more demanding than that catalyzed by the other folate-dependent enzyme of the purine biosynthesis pathway, GAR transformylase. Identification of the AICAR Tfase active site and key catalytic residues is essential to elucidate how the non-nucleophilic AICAR amino group is activated for formyl transfer. Hence, the crystal structure of dimeric avian ATIC was determined as a complex with the AICAR Tfase substrate AICAR, as well as with an IMP cyclohydrolase inhibitor, XMP, to 1.93 Angstrom resolution. AICAR is bound at the dimer interface of the transformylase domains and forms an extensive hydrogen bonding network with a multitude of active site residues. The crystal structure suggests that the conformation of the 4-carboxamide of AICAR is poised to increase the nucleophilicity of the C5 amine, while proton abstraction occurs via His(268) concomitant with formyl transfer. Lys(267) is likely to be involved in the stabilization of the anionic formyl transfer transition state and in subsequent protonation of the THF leaving group.
引用
收藏
页码:15505 / 15513
页数:9
相关论文
共 43 条
[1]  
ADAMIAK DA, 1977, Z NATURFORSCH C, V32, P672
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   STRUCTURAL FEATURES OF 5,10-DIDEAZA-5,6,7,8-TETRAHYDROFOLATE THAT DETERMINE INHIBITION OF MAMMALIAN GLYCINAMIDE RIBONUCLEOTIDE FORMYLTRANSFERASE [J].
BALDWIN, SW ;
TSE, A ;
GOSSETT, LS ;
TAYLOR, EC ;
ROSOWSKY, A ;
SHIH, C ;
MORAN, RG .
BIOCHEMISTRY, 1991, 30 (07) :1997-2006
[4]  
BEARDSLEY GP, 1989, J BIOL CHEM, V264, P328
[5]  
BEARDSLEY GP, 1997, PURINE PYRIMIDINE ME, P221
[6]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[7]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[8]   The kinetic mechanism of the human bifunctional enzyme ATIC (5-amino-4-imidazolecarboxamide ribonucleotide transformylase/inosine 5′-monophosphate cyclohydrolase) -: A surprising lack of substrate channeling [J].
Bulock, KG ;
Beardsley, GP ;
Anderson, KS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (25) :22168-22174
[9]   CRYSTAL-STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE FROM ESCHERICHIA-COLI AT 3.0 ANGSTROM RESOLUTION - A TARGET ENZYME FOR CHEMOTHERAPY [J].
CHEN, P ;
SCHULZEGAHMEN, U ;
STURA, EA ;
INGLESE, J ;
JOHNSON, DL ;
MAROLEWSKI, A ;
BENKOVIC, SJ ;
WILSON, IA .
JOURNAL OF MOLECULAR BIOLOGY, 1992, 227 (01) :283-292
[10]   SOLVENT-ACCESSIBLE SURFACES OF PROTEINS AND NUCLEIC-ACIDS [J].
CONNOLLY, ML .
SCIENCE, 1983, 221 (4612) :709-713