How much effort is required to isolate nuclear microsatellites from plants?

被引:271
作者
Squirrell, J
Hollingsworth, PM
Woodhead, M
Russell, J
Lowe, AJ
Gibby, M
Powell, W
机构
[1] Royal Bot Garden Edinburgh, Edinburgh EH3 5LR, Midlothian, Scotland
[2] Scottish Crop Res Inst, Dundee DD2 5DA, Scotland
[3] Ctr Ecol & Hydrol, Penicuik EH26 0QB, Midlothian, Scotland
关键词
enriched library; genotyping; microsatellites; molecular markers; SSRs;
D O I
10.1046/j.1365-294X.2003.01825.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The attributes of codominance, reproducibility and high resolution have all contributed towards the current popularity of nuclear microsatellites as genetic markers in molecular ecological studies. One of their major drawbacks, however, is the development phase required to obtain working primers for a given study species. To facilitate project planning, we have reviewed the literature to quantify the workload involved in isolating nuclear microsatellites from plants. We highlight the attrition of loci at each stage in the process, and the average effort required to obtain 10 working microsatellite primer pairs.
引用
收藏
页码:1339 / 1348
页数:10
相关论文
共 70 条
  • [1] Isolation and characterization of polymorphic microsatellite loci in Rubus alceifolius Poir. (Rosaceae), an invasive weed in La Reunion island
    Amsellem, L
    Dutech, C
    Billotte, N
    [J]. MOLECULAR ECOLOGY NOTES, 2001, 1 (1-2): : 33 - 35
  • [2] [Anonymous], 2000, MOL ECOL, DOI DOI 10.1046/j.1365-294x.2000.00954.x
  • [3] Baquerizo-Audiot E, 2001, MOL ECOL NOTES, V1, P1, DOI 10.1046/j.1471-8278.2000.00001.x
  • [4] Isolation and characterization of microsatellite markers in the nuclear genome of the brown alga Laminaria digitata (Phaeophyceae)
    Billot, C
    Rousvoal, S
    Estoup, A
    Epplen, JT
    Saumitou-Laprade, P
    Valero, M
    Kloareg, B
    [J]. MOLECULAR ECOLOGY, 1998, 7 (12) : 1778 - 1780
  • [5] Isolation and characterization of microsatellites in iris
    Burke, JM
    Arnold, ML
    [J]. MOLECULAR ECOLOGY, 1999, 8 (06) : 1091 - 1092
  • [6] Burns MJ, 2001, MOL ECOL NOTES, V1, P283, DOI 10.1046/j.1471-8278.2001.00109.x
  • [7] Dinucleotide microsatellite loci isolated from flowering dogwood (Cornus florida L.)
    Cabe, PR
    Liles, JS
    [J]. MOLECULAR ECOLOGY NOTES, 2002, 2 (02): : 150 - 152
  • [8] Characterization of microsatellite loci in Coffea arabica and related coffee species
    Combes, MC
    Andrzejewski, S
    Anthony, F
    Bertrand, B
    Rovelli, P
    Graziosi, G
    Lashermes, P
    [J]. MOLECULAR ECOLOGY, 2000, 9 (08) : 1178 - 1180
  • [9] Isolation and characterization of microsatellites in Echinochloa (L.) Beauv. spp.
    Danquah, EY
    Hanley, SJ
    Brookes, RC
    Aldam, C
    Karp, A
    [J]. MOLECULAR ECOLOGY NOTES, 2002, 2 (01): : 54 - 56
  • [10] Population structure delineated with microsatellite markers in fragmented populations of a tropical tree, Carapa guianensis (Meliaceae)
    Dayanandan, S
    Dole, J
    Bawa, K
    Kesseli, R
    [J]. MOLECULAR ECOLOGY, 1999, 8 (10) : 1585 - 1592