A fluorophore ligase for site-specific protein labeling inside living cells

被引:222
作者
Uttamapinant, Chayasith [1 ]
White, Katharine A. [1 ]
Baruah, Hemanta [1 ]
Thompson, Samuel [1 ]
Fernandez-Suarez, Marta [1 ]
Puthenveetil, Sujiet [1 ]
Ting, Alice Y. [1 ]
机构
[1] MIT, Dept Chem, Cambridge, MA 02139 USA
基金
美国国家卫生研究院;
关键词
fluorescence microscopy; biotechnology; enzyme engineering; GREEN FLUORESCENT PROTEIN; ESCHERICHIA-COLI; NUCLEAR ACTIN; LIPOIC ACID; CRYSTAL-STRUCTURE; MAMMALIAN-CELLS; FUSION PROTEIN; IN-VIVO; PROBES; TAG;
D O I
10.1073/pnas.0914067107
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Biological microscopy would benefit from smaller alternatives to green fluorescent protein for imaging specific proteins in living cells. Here we introduce PRIME (PRobe Incorporation Mediated by Enzymes), a method for fluorescent labeling of peptide-fused recombinant proteins in living cells with high specificity. PRIME uses an engineered fluorophore ligase, which is derived from the natural Escherichia coli enzyme lipoic acid ligase (LplA). Through structure-guided mutagenesis, we created a mutant ligase capable of recognizing a 7-hydroxycoumarin substrate and catalyzing its covalent conjugation to a transposable 13-amino acid peptide called LAP (LplA Acceptor Peptide). We showed that this fluorophore ligation occurs in cells in 10 min and that it is highly specific for LAP fusion proteins over all endogenous mammalian proteins. By genetically targeting the PRIME ligase to specific subcellular compartments, we were able to selectively label spatially distinct subsets of proteins, such as the surface pool of neurexin and the nuclear pool of actin.
引用
收藏
页码:10914 / 10919
页数:6
相关论文
共 40 条
[1]   New biarsenical Ligands and tetracysteine motifs for protein labeling in vitro and in vivo: Synthesis and biological applications [J].
Adams, SR ;
Campbell, RE ;
Gross, LA ;
Martin, BR ;
Walkup, GK ;
Yao, Y ;
Llopis, J ;
Tsien, RY .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (21) :6063-6076
[2]   A comparative study of bioorthogonal reactions with azides [J].
Agard, Nicholas J. ;
Baskin, Jeremy M. ;
Prescher, Jennifer A. ;
Lo, Anderson ;
Bertozzi, Carolyn R. .
ACS CHEMICAL BIOLOGY, 2006, 1 (10) :644-648
[3]   ER calcium and the functions of intracellular organelles [J].
Ashby, MC ;
Tepikin, AV .
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 2001, 12 (01) :11-17
[4]   An engineered aryl azide ligase for site-specific mapping of protein-protein interactions through photo-cross-linking [J].
Baruah, Hemanta ;
Puthenveetil, SuJiet ;
Choi, Yoon-Aa ;
Shah, Samit ;
Ting, Alice Y. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2008, 47 (37) :7018-7021
[5]   A selective block of nuclear actin export stabilizes the giant nuclei of Xenopus oocytes [J].
Bohnsack, MT ;
Stüven, T ;
Kuhn, C ;
Cordes, VC ;
Görlich, D .
NATURE CELL BIOLOGY, 2006, 8 (03) :257-263
[6]   Site-specific labeling of cell surface proteins with biophysical probes using biotin ligase [J].
Chen, I ;
Howarth, M ;
Lin, WY ;
Ting, AY .
NATURE METHODS, 2005, 2 (02) :99-104
[7]   Neurexin-neuroligin signaling in synapse development [J].
Craig, Ann Marie ;
Kang, Yunhee .
CURRENT OPINION IN NEUROBIOLOGY, 2007, 17 (01) :43-52
[8]   Function, attachment and synthesis of lipoic acid in Escherichia coli [J].
Cronan, JE ;
Zhao, X ;
Jiang, YF .
ADVANCES IN MICROBIAL PHYSIOLOGY, VOL 50, 2005, 50 :103-146
[9]   Redirecting lipoic acid ligase for cell surface protein labeling with small-molecule probes [J].
Fernandez-Suarez, Marta ;
Baruah, Hemanta ;
Martinez-Hernandez, Laura ;
Xie, Kathleen T. ;
Baskin, Jeremy M. ;
Bertozzi, Carolyn R. ;
Ting, Alice Y. .
NATURE BIOTECHNOLOGY, 2007, 25 (12) :1483-1487
[10]   Crystal structure of lipoate-protein ligase a from Escherichia coli -: Determination of the lipoic acid-binding site [J].
Fujiwara, K ;
Toma, S ;
Okamura-Ikeda, K ;
Motokawa, Y ;
Nakagawa, A ;
Taniguchi, H .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (39) :33645-33651