A comparison of SAD and two-wavelength MAD phasing for radiation-damaged Se-MET crystals

被引:7
作者
Gonzalez, Ana [1 ]
机构
[1] Stanford Synchrotron Radiat Lab, Menlo Pk, CA 94025 USA
关键词
SAD; MAD; radiation damage;
D O I
10.1107/S0909049506041045
中图分类号
TH7 [仪器、仪表];
学科分类号
0804 ; 080401 ; 081102 ;
摘要
Although a case has been made that single-wavelength anomalous dispersion (SAD) is the optimal strategy for data collection in the presence of radiation damage, two-wavelength MAD experiments at the inflection and a high-energy remote point of the absorption edge have been shown to be a potentially successful alternative method. In order to further investigate the performance of both data collection strategies, a comparison of SAD and MAD phasing was carried out for increasingly damaged data sets from three different selenomethionine protein samples collected under similar experimental conditions. In all but one example the MAD phases appeared to be less affected than SAD phases with increasing exposure to X-rays, and had a better overall success rate, indicating that this method should be given serious consideration when dealing with radiation-sensitive crystals. Simultaneous data collection in wedges at all wavelengths seems to be a very important factor in the success of MAD experiments; the decreased absorbed dose resulting from eschewing data collection at the maximum f '' wavelength may play a less important role. Specific radiation damage to the selenium atoms is found to be a minor effect compared with the effect on the anomalous dispersion signal, although potentially large enough to be a useful contribution to phasing in both SAD and MAD experiments.
引用
收藏
页码:43 / 50
页数:8
相关论文
共 43 条
  • [1] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY
    BAILEY, S
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 760 - 763
  • [2] Crystal structure of the vinculin tail suggests a pathway for activation
    Bakolitsa, C
    de Pereda, JM
    Bagshaw, CR
    Critchley, DR
    Liddington, RC
    [J]. CELL, 1999, 99 (06) : 603 - 613
  • [3] Structural basis for vinculin activation at sites of cell adhesion
    Bakolitsa, C
    Cohen, DM
    Bankston, LA
    Bobkov, AA
    Cadwell, GW
    Jennings, L
    Critchley, DR
    Craig, SW
    Liddington, RC
    [J]. NATURE, 2004, 430 (6999) : 583 - 586
  • [4] Crystal structure of human vinculin
    Borgon, RA
    Vonrhein, C
    Bricogne, G
    Bois, PRJ
    Izard, T
    [J]. STRUCTURE, 2004, 12 (07) : 1189 - 1197
  • [5] Phasing the 30S ribosomal subunit structure
    Brodersen, DE
    Clemons, WM
    Carter, AP
    Wimberly, BT
    Ramakrishnan, V
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2003, 59 : 2044 - 2050
  • [6] Structural changes in a cryo-cooled protein crystal owing to radiation damage
    Burmeister, WP
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 : 328 - 341
  • [7] An automated system to mount cryo-cooled protein crystals on a synchrotron beamline, using compact sample cassettes and a small-scale robot
    Cohen, AE
    Ellis, PJ
    Miller, MD
    Deacon, AM
    Phizackerley, RP
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2002, 35 : 720 - 726
  • [8] Is it jolly SAD?
    Dodson, E
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2003, 59 : 1958 - 1965
  • [9] Coot:: model-building tools for molecular graphics
    Emsley, P
    Cowtan, K
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 : 2126 - 2132
  • [10] CHOOCH:: a program for deriving anomalous-scattering factors from X-ray fluorescence spectra
    Evans, G
    Pettifer, RF
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2001, 34 : 82 - 86