Pyrosequencing™ -: Sequence typing at the speed of light

被引:30
作者
Diggle, MA [1 ]
Clarke, SC [1 ]
机构
[1] Stobhill Gen Hosp, Scottish Meningococcus & Pneumococcus Reference L, Dept Microbiol, Glasgow G21 3EU, Lanark, Scotland
关键词
nucleotide sequencing; bacterial typing; Pyrosequencing;
D O I
10.1385/MB:28:2:129
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nucleotide sequencing is an established method for gaining information relating to partial gene, whole gene, or whole genome sequence. Here we describe some of the background leading to the advent of modern nucleotide sequencing and how it has led to the development of Pyrosequencing(TM), a relatively new method for real-time nucleotide sequencing. In particular, we describe how this method can be used for typing bacterial pathogens.
引用
收藏
页码:129 / 137
页数:9
相关论文
共 55 条
  • [21] Pharmacogenetics in the laboratory and the clinic
    Goldstein, DB
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2003, 348 (06) : 553 - 556
  • [22] Identification of mixed bacterial DNA contamination in broad-range PCR amplification of 16S rDNA V1 and V3 variable regions by pyrosequencing of cloned amplicons
    Grahn, N
    Olofsson, M
    Ellnebo-Svedlund, K
    Monstein, HE
    Jonasson, J
    [J]. FEMS MICROBIOLOGY LETTERS, 2003, 219 (01) : 87 - 91
  • [23] Polymorphisms of the angiotensinogen gene, the endothelial nitric oxide synthase gene, and the interleukin-1β gene promoter in women with idiopathic recurrent miscarriage
    Hefler, LA
    Tempfer, CB
    Bashford, MT
    Unfried, G
    Zeillinger, R
    Schneeberger, C
    Koelbl, H
    Nagele, F
    Huber, JC
    [J]. MOLECULAR HUMAN REPRODUCTION, 2002, 8 (01) : 95 - 100
  • [24] Classification, identification and subtyping of bacteria based on pyrosequencing and signature matching of 16S rDNA fragments
    Jonasson, J
    Olofsson, M
    Monstein, HJ
    [J]. APMIS, 2002, 110 (03) : 263 - 272
  • [25] Detection of the causal mutation for canine leukocyte adhesion deficiency (CLAD) using pyrosequencing
    Kijas, JMH
    Juneja, RK
    Gäfvert, S
    Andersson, L
    [J]. ANIMAL GENETICS, 2000, 31 (05) : 326 - 328
  • [26] Quantitative estimation of viral fitness using Pyrosequencing™
    Lahser, FC
    Wright-Minogue, J
    Skelton, A
    Malcolm, BA
    [J]. BIOTECHNIQUES, 2003, 34 (01) : 26 - 28
  • [27] Initial sequencing and analysis of the human genome
    Lander, ES
    Int Human Genome Sequencing Consortium
    Linton, LM
    Birren, B
    Nusbaum, C
    Zody, MC
    Baldwin, J
    Devon, K
    Dewar, K
    Doyle, M
    FitzHugh, W
    Funke, R
    Gage, D
    Harris, K
    Heaford, A
    Howland, J
    Kann, L
    Lehoczky, J
    LeVine, R
    McEwan, P
    McKernan, K
    Meldrim, J
    Mesirov, JP
    Miranda, C
    Morris, W
    Naylor, J
    Raymond, C
    Rosetti, M
    Santos, R
    Sheridan, A
    Sougnez, C
    Stange-Thomann, N
    Stojanovic, N
    Subramanian, A
    Wyman, D
    Rogers, J
    Sulston, J
    Ainscough, R
    Beck, S
    Bentley, D
    Burton, J
    Clee, C
    Carter, N
    Coulson, A
    Deadman, R
    Deloukas, P
    Dunham, A
    Dunham, I
    Durbin, R
    French, L
    [J]. NATURE, 2001, 409 (6822) : 860 - 921
  • [28] DNA SEQUENCING WITH DYE-LABELED TERMINATORS AND T7 DNA-POLYMERASE - EFFECT OF DYES AND DNTPS ON INCORPORATION OF DYE-TERMINATORS AND PROBABILITY ANALYSIS OF TERMINATION FRAGMENTS
    LEE, LG
    CONNELL, CR
    WOO, SL
    CHENG, RD
    MCARDLE, BF
    FULLER, CW
    HALLORAN, ND
    WILSON, RK
    [J]. NUCLEIC ACIDS RESEARCH, 1992, 20 (10) : 2471 - 2483
  • [29] The NudA protein in the gastric pathogen Helicobacter pylori is an ubiquitous and constitutively expressed dinucleoside polyphosphate hydrolase
    Lundin, A
    Nilsson, C
    Gerhard, M
    Andersson, DI
    Krabbe, M
    Engstrand, L
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (14) : 12574 - 12578
  • [30] Maiden MCJ, 2000, INT J MED MICROBIOL, V290, P183