High-resolution, single-molecule measurements of biomolecular motion

被引:368
作者
Greenleaf, William J. [1 ]
Woodside, Michael T.
Block, Steven M.
机构
[1] Stanford Univ, Dept Appl Phys, Stanford, CA 94305 USA
[2] Stanford Univ, Dept Biol Sci, Stanford, CA 94305 USA
[3] Natl Res Council Canada, Natl Inst Nanotechnol, Edmonton, AB T6G 2V4, Canada
[4] Univ Alberta, Dept Phys, Edmonton, AB T6G 2G7, Canada
来源
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE | 2007年 / 36卷
关键词
optical trap; fluorescence; AFM; force clamp; magnetic tweezers;
D O I
10.1146/annurev.biophys.36.101106.101451
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Many biologically important macromolecules undergo motions that are essential to their function. Biophysical techniques can now resolve the motions of single molecules down to the nanometer scale or even below, providing new insights into the mechanisms that drive molecular movements. This review outlines the principal approaches that have been used for high-resolution measurements of single-molecule motion, including centroid tracking, fluorescence resonance energy transfer, magnetic tweezers, atomic force microscopy, and optical traps. For each technique, the principles of operation are outlined, the capabilities and typical applications are examined, and various practical issues for implementation are considered. Extensions to these methods are also discussed, with an eye toward future application to outstanding biological problems.
引用
收藏
页码:171 / 190
页数:20
相关论文
共 118 条
[1]   Direct observation of base-pair stepping by RNA polymerase [J].
Abbondanzieri, EA ;
Greenleaf, WJ ;
Shaevitz, JW ;
Landick, R ;
Block, SM .
NATURE, 2005, 438 (7067) :460-465
[2]   Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior [J].
Adelman, K ;
La Porta, A ;
Santangelo, TJ ;
Lis, JT ;
Roberts, JW ;
Wang, MD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (21) :13538-13543
[3]   The mechanism of myosin VI translocation an its load-induced anchoring [J].
Altman, D ;
Sweeney, HL ;
Spudich, JA .
CELL, 2004, 116 (05) :737-749
[4]   Kinesin moves by an asymmetric hand-over-hand mechanism [J].
Asbury, CL ;
Fehr, AN ;
Block, SM .
SCIENCE, 2003, 302 (5653) :2130-2134
[5]   Using single-particle tracking to study nuclear trafficking of viral genes [J].
Babcock, HP ;
Chen, C ;
Zhuang, XW .
BIOPHYSICAL JOURNAL, 2004, 87 (04) :2749-2758
[6]  
BATES M, 2005, BIOPHYS J, V94
[7]  
Bayer E A, 1980, Methods Biochem Anal, V26, P1
[8]   Power spectrum analysis for optical tweezers [J].
Berg-Sorensen, K ;
Flyvbjerg, H .
REVIEW OF SCIENTIFIC INSTRUMENTS, 2004, 75 (03) :594-612
[9]   Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation [J].
Best, RB ;
Li, B ;
Steward, A ;
Daggett, V ;
Clarke, J .
BIOPHYSICAL JOURNAL, 2001, 81 (04) :2344-2356
[10]   Oriented loading of FtsK on KOPS [J].
Bigot, Sarah ;
Saleh, Omar A. ;
Cornet, Francois ;
Allemand, Jean-Francois ;
Barre, Francois-Xavier .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2006, 13 (11) :1026-1028