Modelling evolution on design-by-contract predicts an origin of Life through an abiotic double-stranded RNA world

被引:8
作者
de Roos, Albert D. G. [1 ]
机构
[1] Syncyte BioIntelligence, NL-1000 AP Amsterdam, Netherlands
关键词
D O I
10.1186/1745-6150-2-12
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: It is generally believed that life first evolved from single-stranded RNA (ssRNA) that both stored genetic information and catalyzed the reactions required for self-replication. Presentation of the hypothesis: By modeling early genome evolution on the engineering paradigm design-by-contract, an alternative scenario is presented in which life started with the appearance of double-stranded RNA (dsRNA) as an informational storage molecule while catalytic single-stranded RNA was derived from this dsRNA template later in evolution. Testing the hypothesis: It was investigated whether this scenario could be implemented mechanistically by starting with abiotic processes. Double- stranded RNA could be formed abiotically by hybridization of oligoribonucleotides that are subsequently non-enzymatically ligated into a double-stranded chain. Thermal cycling driven by the diurnal temperature cycles could then replicate this dsRNA when strands of dsRNA separate and later rehybridize and ligate to reform dsRNA. A temperature- dependent partial replication of specific regions of dsRNA could produce the first template-based generation of catalytic ssRNA, similar to the developmental gene transcription process. Replacement of these abiotic processes by enzymatic processes would guarantee functional continuity. Further transition from a dsRNA to a dsDNA world could be based on minor mutations in template and substrate recognition sites of an RNA polymerase and would leave all existing processes intact. Implications of the hypothesis: Modeling evolution on a design pattern, the 'dsRNA first' hypothesis can provide an alternative mechanistic evolutionary scenario for the origin of our genome that preserves functional continuity.
引用
收藏
页数:11
相关论文
共 49 条
[1]   A single side chain prevents Escherichia coli DNA polymerase I (Klenow fragment) from incorporating ribonucleotides [J].
Astatke, M ;
Ng, KM ;
Grindley, NDF ;
Joyce, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (07) :3402-3407
[2]   RNA AS AN RNA-POLYMERASE - NET ELONGATION OF AN RNA PRIMER CATALYZED BY THE TETRAHYMENA RIBOZYME [J].
BEEN, MD ;
CECH, TR .
SCIENCE, 1988, 239 (4846) :1412-1416
[3]   Opening of nucleic-acid double strands by helicases:: Active versus passive opening -: art. no. 011904 [J].
Betterton, MD ;
Jülicher, F .
PHYSICAL REVIEW E, 2005, 71 (01)
[4]   Thermal stability of DNA [J].
Blake, RD ;
Delcourt, SG .
NUCLEIC ACIDS RESEARCH, 1998, 26 (14) :3323-3332
[5]   TEMPLATE SWITCHING BETWEEN PNA AND RNA OLIGONUCLEOTIDES [J].
BOHLER, C ;
NIELSEN, PE ;
ORGEL, LE .
NATURE, 1995, 376 (6541) :578-581
[6]   A single tyrosine prevents insertion of ribonucleotides in the eukaryotic-type φ29 DNA polymerase [J].
Bonnin, A ;
Lázaro, JM ;
Blanco, L ;
Salas, M .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 290 (01) :241-251
[7]   Terminal deoxynucleotidyl transferase indiscriminately incorporates ribonucleotides and deoxyribonucleotides [J].
Boulé, JB ;
Rougeon, F ;
Papanicolaou, C .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (33) :31388-31393
[8]   Exponential DNA replication by laminar convection [J].
Braun, D ;
Goddard, NL ;
Libchaber, A .
PHYSICAL REVIEW LETTERS, 2003, 91 (15)
[9]  
Breivik J., 2001, Entropy, V3, DOI 10.3390/e3040273
[10]   The elimination of primer-dimer accumulation in PCR [J].
Brownie, J ;
Shawcross, S ;
Theaker, J ;
Whitcombe, D ;
Ferrie, R ;
Newton, C ;
Little, S .
NUCLEIC ACIDS RESEARCH, 1997, 25 (16) :3235-3241