Principles of nanostructure design with protein building blocks

被引:47
作者
Tsai, Chung-Jung
Zheng, Jie
Zanuy, David
Haspel, Nurit
Wolfson, Haim
Aleman, Carlos
Nussinov, Ruth [1 ]
机构
[1] SAIC Frederick Inc, Ctr Canc Res NAnobiol Program, NCI Frederick, Basic Res Program, Frederick, MD 21702 USA
[2] Univ Politecn Cataluna, Dept Engn Quim, ETS Engn Ind, E-08028 Barcelona, Spain
[3] Tel Aviv Univ, Sch Comp Sci, IL-69978 Tel Aviv, Israel
[4] Tel Aviv Univ, Sackler Inst Mol Med, Dept Human Genet & Mol Med, Sackler Sch Med, IL-69978 Tel Aviv, Israel
关键词
nanostructure design; protein building blocks; self-assembly; protein folding; repeat proteins;
D O I
10.1002/prot.21413
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Currently there is increasing interest in nanostructures and their design. Nanostructure design involves the ability to predictably manipulate the properties of the self-assembly of autonomous units. Autonomous units have preferred conformational states. The units can be synthetic material science-based or derived from functional biological macromolecules. Autonomous biological building blocks with available structures provide an extremely rich and useful resource for design. For proteins, the structural databases contain large libraries of protein molecules and their building blocks with a range of shapes, surfaces, and chemical properties. The introduction of engineered synthetic residues or short peptides into these can expand the available chemical space and enhance the desired properties. Here we focus on the principles of nanostructure design with protein building blocks.
引用
收藏
页码:1 / 12
页数:12
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共 58 条
[1]   Influence of the phenyl side chain on the conformation of cyclopropane analogues of phenylalanine [J].
Alemán, C ;
Jiménez, AI ;
Cativiela, C ;
Perez, JJ ;
Casanovas, J .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (45) :11849-11858
[2]   Is protein folding hierarchic? I. Local structure and peptide folding [J].
Baldwin, RL ;
Rose, GD .
TRENDS IN BIOCHEMICAL SCIENCES, 1999, 24 (01) :26-33
[3]   The molecular structure of the Toll-like receptor 3 ligand-binding domain [J].
Bell, JK ;
Botos, I ;
Hall, PR ;
Askins, J ;
Shiloach, J ;
Segal, DM ;
Davies, DR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (31) :10976-10980
[4]   The Protein Data Bank [J].
Berman, HM ;
Battistuz, T ;
Bhat, TN ;
Bluhm, WF ;
Bourne, PE ;
Burkhardt, K ;
Iype, L ;
Jain, S ;
Fagan, P ;
Marvin, J ;
Padilla, D ;
Ravichandran, V ;
Schneider, B ;
Thanki, N ;
Weissig, H ;
Westbrook, JD ;
Zardecki, C .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :899-907
[5]   Crystal structure of a consensus-designed ankyrin repeat protein:: Implications for stability [J].
Binz, H. Kaspar ;
Kohl, Andreas ;
Plueckthun, Andreas ;
Gruetter, Markus G. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2006, 65 (02) :280-284
[6]   N-acetyl-N′-methylamide derivative of (2S,3S)-1-amino-2,3-diphenylcyclopropane-carboxylic acid:: Theoretical analysis of the conformational impact produced by the incorporation of the second phenyl group to the cyclopropane analogue of phenylalanine [J].
Casanovas, J ;
Jiménez, AI ;
Cativiela, C ;
Pérez, JJ ;
Alemán, C .
JOURNAL OF ORGANIC CHEMISTRY, 2003, 68 (18) :7088-7091
[7]   Periplasmic binding proteins: a versatile superfamily for protein engineering [J].
Dwyer, MA ;
Hellinga, HW .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2004, 14 (04) :495-504
[8]   Nano neuro knitting: Peptide nanofiber scaffold for brain repair and axon regeneration with functional return of vision [J].
Ellis-Behnke, RG ;
Liang, YX ;
You, SW ;
Tay, DKC ;
Zhang, SG ;
So, KF ;
Schneider, GE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (13) :5054-5059
[9]   Cancer nanotechnology: Opportunities and challenges [J].
Ferrari, M .
NATURE REVIEWS CANCER, 2005, 5 (03) :161-171
[10]   Reducing the computational complexity of protein folding via fragment folding and assembly [J].
Haspel, N ;
Tsai, CJ ;
Wolfson, H ;
Nussinov, R .
PROTEIN SCIENCE, 2003, 12 (06) :1177-1187