SilkDB v2.0: a platform for silkworm (Bombyx mori) genome biology

被引：212

作者：

Duan, Jun ^{[1
,2
]}

Li, Ruiqiang ^{[3
]}

Cheng, Daojun ^{[1
]}

Fan, Wei ^{[3
]}

Zha, Xingfu ^{[1
]}

Cheng, Tingcai ^{[1
,2
]}

Wu, Yuqian ^{[2
]}

Wang, Jun ^{[3
]}

Mita, Kazuei ^{[4
]}

Xiang, Zhonghuai ^{[1
]}

Xia, Qingyou ^{[1
,2
]}

机构：

[1] Southwest Univ, Minist Agr, Key Sericultural Lab, Chongqing 400716, Peoples R China

[2] Chongqing Univ, Inst Agr & Life Sci, Chongqing 400030, Peoples R China

[3] Beijing Genom Inst Shenzhen, Shenzhen 518083, Peoples R China

[4] Natl Inst Agrobiol Sci, Tsukuba, Ibaraki 3058634, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

基金：

中国国家自然科学基金;

关键词：

DOMESTICATED SILKWORM; SEQUENCE; DATABASE;

D O I：

10.1093/nar/gkp801

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The SilkDB is an open-access database for genome biology of the silkworm (Bombyx mori). Since the draft sequence was completed and the SilkDB was first released 5 years ago, we have collaborated with other groups to make much remarkable progress on silkworm genome research, such as the completion of a new high-quality assembly of the silkworm genome sequence as well as the construction of a genome-wide microarray to survey gene expression profiles. To accommodate these new genomic data and house more comprehensive genomic information, we have reconstructed SilkDB database with new web interfaces. In the new version (v2.0) of SilkDB, we updated the genomic data, including genome assembly, gene annotation, chromosomal mapping, orthologous relationship and experiment data, such as microarray expression data, Expressed Sequence Tags (ESTs) and corresponding references. Several new tools, including SilkMap, Silkworm Chromosome Browser (SCB) and BmArray, are developed to access silkworm genomic data conveniently. SilkDB is publicly available at the new URL of http://www.silkdb.org.

引用

页码：D453 / D456

页数：4

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