GeneBins: a database for classifying gene expression data, with application to plant genome arrays

被引：38

作者：

Goffard, Nicolas

Weiller, Georg

机构：

[1] Australian Natl Univ, ARC Ctr Excellence Integrat Legume Res, Canberra, ACT 2601, Australia

[2] Australian Natl Univ, Bioinformat Lab, Genom Interact Grp, Res Sch Biol Sci, Canberra, ACT 2601, Australia

来源：

BMC BIOINFORMATICS | 2007年 / 8卷 / 1期

关键词：

D O I：

10.1186/1471-2105-8-87

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We developed a bioinformatics system to assign the probe set sequences of any organism to a hierarchical functional classification modelled on KEGG ontology. The GeneBins database currently supports the functional classification of expression data from four Affymetrix arrays; Arabidopsis thaliana, Oryza sativa, Glycine max and Medicago truncatula. An online analysis tool to identify relevant functions is also provided. Conclusion: GeneBins provides resources to interpret gene expression results from microarray experiments. It is available at http://bioinfoserver.rsbs.anu.edu.au/utils/GeneBins/.

引用

页数：5

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