Combining SPOT synthesis and native peptide ligation to create large arrays of WW protein domains

被引:46
作者
Toepert, F
Knaute, T
Guffler, S
Pirés, JR
Matzdorf, T
Oschkinat, H
Schneider-Mergener, J
机构
[1] Humboldt Univ, Charite, Inst Med Immunol, D-10115 Berlin, Germany
[2] Forschungsinst Mol Pharmakol, D-13125 Berlin, Germany
[3] Jerini AG, D-10115 Berlin, Germany
关键词
peptides; protein arrays; protein design; protein modifications;
D O I
10.1002/anie.200390298
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
More than 10000 variants of a 38 mer WW protein domain were prepared and screened successively with 22 different dye-labeled peptide ligands (see picture). This approach has enabled more than 250000 binding experiments to be performed and has revealed comprehensive information regarding the sequence requirements for binding. Thus, WW variants with novel binding specificities were identified.
引用
收藏
页码:1136 / 1140
页数:5
相关论文
共 27 条
[11]   INVESTIGATION OF EXCHANGE PROCESSES BY 2-DIMENSIONAL NMR-SPECTROSCOPY [J].
JEENER, J ;
MEIER, BH ;
BACHMANN, P ;
ERNST, RR .
JOURNAL OF CHEMICAL PHYSICS, 1979, 71 (11) :4546-4553
[12]   Peptide bond formation mediated by 4,5-dimethoxy-2-mercaptobenzylamine after periodate oxidation of the N-terminal serine residue [J].
Kawakami, T ;
Akaji, K ;
Aimoto, S .
ORGANIC LETTERS, 2001, 3 (09) :1403-1405
[13]   Spot synthesis:: observations and optimizations [J].
Kramer, A ;
Reineke, U ;
Dong, L ;
Hoffmann, B ;
Hoffmüller, U ;
Winkler, D ;
Volkmer-Engert, R ;
Schneider-Mergener, J .
JOURNAL OF PEPTIDE RESEARCH, 1999, 54 (04) :319-327
[14]   Modular peptide recognition domains in eukaryotic signaling [J].
Kuriyan, J ;
Cowburn, D .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 1997, 26 :259-288
[15]   SAMPLING AND EFFICIENCY OF METRIC MATRIX DISTANCE GEOMETRY - A NOVEL PARTIAL METRIZATION ALGORITHM [J].
KUSZEWSKI, J ;
NILGES, M ;
BRUNGER, AT .
JOURNAL OF BIOMOLECULAR NMR, 1992, 2 (01) :33-56
[16]   Critical role of WW domain phosphorylation in regulating phosphoserine binding activity and Pin1 function [J].
Lu, PJ ;
Zhou, XZ ;
Liou, YC ;
Noel, JP ;
Lu, KP .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (04) :2381-2384
[17]   Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide [J].
Macias, MJ ;
Hyvonen, M ;
Baraldi, E ;
Schultz, J ;
Sudol, M ;
Saraste, M ;
Oschkinat, H .
NATURE, 1996, 382 (6592) :646-649
[18]   Extending synthetic access to proteins with a removable acyl transfer auxiliary [J].
Offer, J ;
Boddy, CNC ;
Dawson, PE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (17) :4642-4646
[19]   Regulation of Btk function by a major autophosphorylation site within the SH3 domain [J].
Park, H ;
Wahl, MI ;
Afar, DEH ;
Turck, CW ;
Rawlings, DJ ;
Tam, C ;
Scharenberg, AM ;
Kinet, JP ;
Witte, ON .
IMMUNITY, 1996, 4 (05) :515-525
[20]   Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope [J].
Pires, JR ;
Taha-Nejad, F ;
Toepert, F ;
Ast, T ;
Hoffmüller, U ;
Schneider-Mergener, J ;
Kühne, R ;
Macias, MJ ;
Oschkinat, L .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 314 (05) :1147-1156