Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

被引：1456

作者：

Bowers, Robert M. ^{[1
]}

Kyrpides, Nikos C. ^{[1
]}

Stepanauskas, Ramunas ^{[2
]}

Harmon-Smith, Miranda ^{[1
]}

Doud, Devin ^{[1
]}

Reddy, T. B. K. ^{[1
]}

Schulz, Frederik ^{[1
]}

Jarett, Jessica ^{[1
]}

Rivers, Adam R. ^{[1
,3
]}

Eloe-Fadrosh, Emiley A. ^{[1
]}

Tringe, Susannah G. ^{[1
,4
]}

Ivanova, Natalia N. ^{[1
]}

Copeland, Alex ^{[1
]}

Clum, Alicia ^{[1
]}

Becraft, Eric D. ^{[2
]}

Malmstrom, Rex R. ^{[1
]}

Birren, Bruce ^{[5
]}

Podar, Mircea ^{[6
]}

Bork, Peer ^{[7
]}

Weinstock, George M. ^{[8
]}

Garrity, George M. ^{[9
]}

Dodsworth, Jeremy A. ^{[10
]}

Yooseph, Shibu ^{[11
]}

Sutton, Granger ^{[12
]}

Gloeckner, Frank O. ^{[13
]}

Gilbert, Jack A. ^{[14
,15
]}

Nelson, William C. ^{[16
]}

Hallam, Steven J. ^{[17
]}

Jungbluth, Sean P. ^{[1
,18
]}

Ettema, Thijs J. G. ^{[19
]}

Tighe, Scott ^{[20
]}

Konstantinidis, Konstantinos T. ^{[21
]}

Liu, Wen-Tso ^{[22
]}

Baker, Brett J. ^{[23
]}

Rattei, Thomas ^{[24
]}

Eisen, Jonathan A. ^{[25
]}

Hedlund, Brian ^{[26
,27
]}

McMahon, Katherine D. ^{[28
,29
]}

Fierer, Noah ^{[30
,31
]}

Knight, Rob ^{[32
,33
,34
]}

Finn, Rob ^{[35
]}

Cochrane, Guy ^{[35
]}

Karsch-Mizrachi, Ilene ^{[36
]}

Tyson, Gene W. ^{[37
]}

Rinke, Christian ^{[37
]}

Lapidus, Alla ^{[38
]}

Meyer, Folker ^{[14
]}

Yilmaz, Pelin ^{[13
]}

Parks, Donovan H. ^{[37
]}

Eren, A. M. ^{[39
]}

机构：

[1] Joint Genome Inst, Dept Energy, Walnut Creek, CA 94598 USA

[2] Bigelow Lab Ocean Sci, East Boothbay, ME USA

[3] ARS, USDA, Genom & Bioinformat Res Unit, Gainesville, FL USA

[4] Univ Calif Merced, Sch Nat Sci, Merced, CA 95340 USA

[5] Broad Inst, Cambridge, MA USA

[6] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN USA

[7] European Mol Biol Lab, Struct & Computat Biol Unit, Heidelberg, Germany

[8] Jackson Lab Genom Med, Farmington, CT USA

[9] Michigan State Univ, Dept Microbiol & Mol Genet, Biomed Phys Sci, E Lansing, MI 48824 USA

[10] Calif State Univ San Bernardino, Dept Biol, San Bernardino, CA 92407 USA

[11] J Craig Venter Inst, San Diego, CA USA

[12] J Craig Venter Inst, Rockville, MD USA

[13] Max Planck Inst Marine Microbiol, Microbial Genom & Bioinformat Res Grp, Bremen, Germany

[14] Argonne Natl Lab, Biosci Div, 9700 S Cass Ave, Argonne, IL 60439 USA

[15] Univ Chicago, Dept Surg, 5841 S Maryland Ave, Chicago, IL 60637 USA

[16] Pacific Northwest Natl Lab, Earth & Biol Sci Directorate, Biol Sci Div, Richland, WA USA

[17] Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC, Canada

[18] Univ Southern Calif, Ctr Dark Energy Biosphere Invest, Los Angeles, CA USA

[19] Uppsala Univ, Sci Life Lab, Dept Cell & Mol Biol, Uppsala, Sweden

[20] Univ Vermont, Canc Ctr, Adv Genom Lab, Burlington, VT USA

[21] Georgia Inst Technol, Sch Civil & Environm Engn, Atlanta, GA USA

[22] Univ Illinois, Dept Civil & Environm Engn, Urbana, IL USA

[23] Univ Texas Austin, Marine Sci Inst, Dept Marine Sci, Austin, TX 78712 USA

[24] Univ Vienna, Dept Microbiol & Ecosyst Sci, Vienna, Austria

[25] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

[26] Univ Nevada, Sch Life Sci, Las Vegas, NV 89154 USA

[27] Univ Nevada, Nevada Inst Personalized Med, Las Vegas, NV 89154 USA

[28] Univ Wisconsin, Dept Civil & Environm Engn, Madison, WI 53706 USA

[29] Univ Wisconsin, Dept Bacteriol, Madison, WI 53706 USA

[30] Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA

[31] Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO USA

[32] Univ Calif San Diego, Ctr Microbiome Innovat, La Jolla, CA 92093 USA

[33] Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA

[34] Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USA

[35] Welcome Trust Genome Campus, European Bioinformat Inst, European Mol Biol Lab, Cambridge, England

[36] NIH, Nat Ctr Biotechnol Informat, Natl Lib Med, Bldg 10, Bethesda, MD 20892 USA

[37] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogen, Brisbane, Qld, Australia

[38] St Petersburg State Univ, ITBM, Ctr Algorithm Biotechnol, St Petersburg, Russia

[39] Knapp Ctr Biomed Discovery, Chicago, IL USA

[40] NCI, Frederick, MD 21701 USA

[41] Univ Calif Berkeley, Dept Earth & Planetary Sci, Berkeley, CA 94720 USA

来源：

NATURE BIOTECHNOLOGY | 2017年 / 35卷 / 08期

基金：

美国国家卫生研究院; 美国国家科学基金会; 俄罗斯科学基金会; 欧洲研究理事会; 英国生物技术与生命科学研究理事会; 美国食品与农业研究所; 澳大利亚研究理事会;

关键词：

COMMUNITY GENOMICS; MICROBIAL GENOMES; CELL GENOMICS; AMPLIFICATION; METABOLISM; SEQUENCES; PHYLOGENY; ACCURATE; MICROORGANISMS; IDENTIFICATION;

D O I：

10.1038/nbt.3893

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 [微生物学]; 090105 [作物生产系统与生态工程];

摘要：

We present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome-Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.

引用

页码：725 / 731

页数：7

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