Drosophila genome-wide RNAi screens:: Are they delivering the promise?

被引:14
作者
Mathey-Prevot, B. [1 ]
Perrimon, N. [1 ]
机构
[1] Harvard Univ, Sch Med, Dept Genet, Howard Hughes Med Inst, Boston, MA 02115 USA
关键词
D O I
10.1101/sqb.2006.71.027
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
The emergence of RNA interference (RNAi) on the heels of the successful completion of the Drosophila genome project was seen by many as the ace in functional genomics: Its application would quickly assign a function to all genes in this organism and help delineate the complex web of interactions or networks linking them at the systemic level. A few years wiser and a number of genome-wide Drosophila RNAi screens later, we reflect on the state of high-throughput RNAi screens in Drosophila and ask whether the initial promise was fulfilled. We review the impact that this approach has had in the field of Drosophila research and chart out strategies to extract maximal benefit from the application of RNAi to gene discovery and pursuit of systems biology.
引用
收藏
页码:141 / 148
页数:8
相关论文
共 44 条
[1]
The genome sequence of Drosophila melanogaster [J].
Adams, MD ;
Celniker, SE ;
Holt, RA ;
Evans, CA ;
Gocayne, JD ;
Amanatides, PG ;
Scherer, SE ;
Li, PW ;
Hoskins, RA ;
Galle, RF ;
George, RA ;
Lewis, SE ;
Richards, S ;
Ashburner, M ;
Henderson, SN ;
Sutton, GG ;
Wortman, JR ;
Yandell, MD ;
Zhang, Q ;
Chen, LX ;
Brandon, RC ;
Rogers, YHC ;
Blazej, RG ;
Champe, M ;
Pfeiffer, BD ;
Wan, KH ;
Doyle, C ;
Baxter, EG ;
Helt, G ;
Nelson, CR ;
Miklos, GLG ;
Abril, JF ;
Agbayani, A ;
An, HJ ;
Andrews-Pfannkoch, C ;
Baldwin, D ;
Ballew, RM ;
Basu, A ;
Baxendale, J ;
Bayraktaroglu, L ;
Beasley, EM ;
Beeson, KY ;
Benos, PV ;
Berman, BP ;
Bhandari, D ;
Bolshakov, S ;
Borkova, D ;
Botchan, MR ;
Bouck, J ;
Brokstein, P .
SCIENCE, 2000, 287 (5461) :2185-2195
[2]
Genome-wide RNAi screen for host factors required for intracellular bacterial infection [J].
Agaisse, H ;
Burrack, LS ;
Philips, JA ;
Rubin, EJ ;
Perrimon, N ;
Higgins, DE .
SCIENCE, 2005, 309 (5738) :1248-1251
[3]
High-throughput RNA interference screens in Drosophila tissue culture cells [J].
Armknecht, S ;
Boutros, M ;
Kiger, A ;
Nybakken, K ;
Mathey-Prevot, B ;
Perrimon, N .
RNA INTERFERENCE, 2005, 392 :55-+
[4]
Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila [J].
Baeg, GH ;
Zhou, R ;
Perrimon, N .
GENES & DEVELOPMENT, 2005, 19 (16) :1861-1870
[5]
Functional genomics reveals genes involved in protein secretion and Golgi organization [J].
Bard, F ;
Casano, L ;
Mallabiabarrena, A ;
Wallace, E ;
Saito, K ;
Kitayama, H ;
Guizzunti, G ;
Hu, Y ;
Wendler, F ;
DasGupta, R ;
Perrimon, N ;
Malhotra, V .
NATURE, 2006, 439 (7076) :604-607
[6]
Secretion of Wnt Ligands requires Evi, a conserved transmembrane protein [J].
Bartscherer, Kerstin ;
Pelte, Nadege ;
Ingelfinger, Dierk ;
Boutros, Michael .
CELL, 2006, 125 (03) :523-533
[7]
3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets [J].
Birmingham, A ;
Anderson, EM ;
Reynolds, A ;
Ilsley-Tyree, D ;
Leake, D ;
Fedorov, Y ;
Baskerville, S ;
Maksimova, E ;
Robinson, K ;
Karpilow, J ;
Marshall, WS ;
Khvorova, A .
NATURE METHODS, 2006, 3 (03) :199-204
[8]
Identification of pathways regulating cell size and cell-cycle progression by RNAi [J].
Björklund, M ;
Taipale, M ;
Varjosalo, M ;
Saharinen, J ;
Lahdenperä, J ;
Taipale, J .
NATURE, 2006, 439 (7079) :1009-1013
[9]
Sequential activation of signaling pathways during innate immune responses in Drosophila [J].
Boutros, M ;
Agaisse, H ;
Perrimon, N .
DEVELOPMENTAL CELL, 2002, 3 (05) :711-722
[10]
Genome-wide RNAi analysis of growth and viability in Drosophila cells [J].
Boutros, M ;
Kiger, AA ;
Armknecht, S ;
Kerr, K ;
Hild, M ;
Koch, B ;
Haas, SA ;
Paro, R ;
Perrimon, N .
SCIENCE, 2004, 303 (5659) :832-835