The Protein Data Bank and structural genomics

被引:292
作者
Westbrook, J [1 ]
Feng, ZK [1 ]
Chen, L [1 ]
Yang, HW [1 ]
Berman, HM [1 ]
机构
[1] Rutgers State Univ, Dept Chem & Biol Chem, Res Collaboratory Struct Bioinformat, Piscataway, NJ 08854 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
D O I
10.1093/nar/gkg068
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Protein Data Bank ( PDB; http: / / www. pdb. org/) continues to be actively involved in various aspects of the informatics of structural genomics projects developing and maintaining the Target Registration Database ( TargetDB), organizing data dictionaries that will de ne the specification for the exchange and deposition of data with the structural genomics centers and creating software tools to capture data from standard structure determination applications.
引用
收藏
页码:489 / 491
页数:3
相关论文
共 9 条
[1]   The Protein Data Bank and the challenge of structural genomics [J].
Berman, HM ;
Bhat, TN ;
Bourne, PE ;
Feng, ZK ;
Gilliland, G ;
Weissig, H ;
Westbrook, J .
NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) :957-959
[2]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[3]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[4]   Macromolecular crystallographic information file [J].
Bourne, PE ;
Berman, HM ;
McMahon, B ;
Watenpaugh, KD ;
Westbrook, JD ;
Fitzgerald, PMD .
MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :571-590
[5]   The PRESAGE database for structural genomics [J].
Brenner, SE ;
Barken, D ;
Levitt, M .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :251-253
[6]   IMPROVED TOOLS FOR BIOLOGICAL SEQUENCE COMPARISON [J].
PEARSON, WR ;
LIPMAN, DJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (08) :2444-2448
[7]  
*TASK FORC DEP ANN, 2001, 2 INT STRUCT GEN M A
[8]  
*TASK FORC TARG TR, 2001, 2 INT STRUCT GEN M A
[9]   STAR/mmCIF: An ontology for macromolecular structure [J].
Westbrook, JD ;
Bourne, PE .
BIOINFORMATICS, 2000, 16 (02) :159-168