One oxidant, many pathways: a theoretical perspective of monooxygenation mechanisms by cytochrome P450 enzymes

被引:86
作者
Shaik, S [1 ]
de Visser, SP
Kumar, D
机构
[1] Hebrew Univ Jerusalem, Dept Organ Chem, IL-91904 Jerusalem, Israel
[2] Hebrew Univ Jerusalem, Lise Meitner Minerva Ctr Computat Quantum Chem, IL-91904 Jerusalem, Israel
来源
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY | 2004年 / 9卷 / 06期
基金
以色列科学基金会;
关键词
compound I; cytochrome P450; density functional calculations; enzyme catalysis; two-state reactivity;
D O I
10.1007/s00775-004-0576-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Density functional theoretical studies of monooxygenation reactivity of the high-valent oxoiron(IV) porphyrin cation-radical compound of cytochrome P450, the so-called Compound I, and of its precursor, the ferric(Ill)-hydroperoxide species, are described. The degeneracy of the spin states of Compound 1, its electron deficiency, and dense orbital manifold lead to two-state and multi-state reactivity scenarios and may thereby create reactivity patterns as though belonging to two or more different oxidants. Most of the controversies in the experimental data are reconciled using Compound I as the sole competent oxidant. Theory finds ferric(Ill)-hydroperoxide to be a very sluggish oxidant, noncompetitive with Compound I. If and when Compound I is absent, P450 oxidation will logically proceed by another form, but this has to be more reactive than ferric(Ill)-hydroperoxide. Theoretical studies are conducted to pinpoint such an oxidant for P450.
引用
收藏
页码:661 / 668
页数:8
相关论文
共 33 条
[1]   Experimental and theoretical study of the effect of active-site constrained substrate motion on the magnitude of the observed intramolecular isotope effect for the P450 101 catalyzed benzylic hydroxylation of isomeric xylenes and 4,4′-dimethylbiphenyl [J].
Audergon, C ;
Iyer, KR ;
Jones, JP ;
Darbyshire, JF ;
Trager, WF .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (01) :41-47
[2]   Hydroxylation by the hydroperoxy-iron species in cytochrome P450 enzymes [J].
Chandrasena, REP ;
Vatsis, KP ;
Coon, MJ ;
Hollenberg, PF ;
Newcomb, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (01) :115-126
[3]   Hydroxylation of camphor by-reduced oxy-cytochrome P450cam: Mechanistic implications of EPR and ENDOR studies of catalytic intermediates in native and mutant enzymes [J].
Davydov, R ;
Makris, TM ;
Kofman, V ;
Werst, DE ;
Sligar, SG ;
Hoffman, BM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (07) :1403-1415
[4]   Oxidizing species in the mechanism of cytochrome P450 [J].
de Montellano, PRO ;
De Voss, JJ .
NATURAL PRODUCT REPORTS, 2002, 19 (04) :477-493
[5]   How do aldehyde side products by cytochrome P450? Theory reveals a state-specific multi-state scenario where the high-spin component leads to all side products [J].
de Visser, SP ;
Kumar, D ;
Shaik, S .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2004, 98 (07) :1183-1193
[6]   A proton-shuttle mechanism mediated by the porphyrin in benzene hydroxylation by cytochrome P450 enzymes [J].
de Visser, SP ;
Shaik, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (24) :7413-7424
[7]  
de Visser SP, 2001, ANGEW CHEM INT EDIT, V40, P2871, DOI 10.1002/1521-3773(20010803)40:15<2871::AID-ANIE2871>3.0.CO
[8]  
2-R
[9]   The bioinorganic chemistry of iron in oxygenases and supramolecular assemblies [J].
Groves, JT .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (07) :3569-3574
[10]   ALIPHATIC HYDROXYLATION BY HIGHLY PURIFIED LIVER MICROSOMAL CYTOCHROME-P-450 - EVIDENCE FOR A CARBON RADICAL INTERMEDIATE [J].
GROVES, JT ;
MCCLUSKY, GA ;
WHITE, RE ;
COON, MJ .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1978, 81 (01) :154-160