The SAMPL2 blind prediction challenge: introduction and overview

被引:166
作者
Geballe, Matthew T. [1 ]
Skillman, A. Geoffrey [1 ]
Nicholls, Anthony [1 ]
Guthrie, J. Peter [2 ]
Taylor, Peter J. [3 ]
机构
[1] OpenEye Sci Software Inc, Santa Fe, NM 87508 USA
[2] Univ Western Ontario, Dept Chem, London, ON, Canada
[3] AstraZenica Pharmaceut, London, England
关键词
Solvation; Transfer energy; Tautomers; Blind prediction; Validation; SOLVATION FREE-ENERGIES; HENRYS LAW CONSTANTS; VAPOR-PRESSURE; AQUEOUS SOLUBILITY; PARA-NITROANILINE; MOLAR ENTHALPIES; POLYCHLORINATED-BIPHENYLS; THERMODYNAMIC PROPERTIES; HALOGENATED DERIVATIVES; TEMPERATURE-DEPENDENCE;
D O I
10.1007/s10822-010-9350-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The interactions between a molecule and the aqueous environment underpin any process that occurs in solution, from simple chemical reactions to protein-ligand binding to protein aggregation. Fundamental measures of the interaction between molecule and aqueous phase, such as the transfer energy between gas phase and water or the energetic difference between two tautomers of a molecule in solution, remain nontrivial to predict accurately using current computational methods. SAMPL2 represents the third annual blind prediction of transfer energies, and the first time tautomer ratios were included in the challenge. Over 60 sets of predictions were submitted, and each participant also attempted to estimate the error in their predictions, a task that proved difficult for most. The results of this blind assessment of the state of the field for transfer energy and tautomer ratio prediction both indicate where the field is performing well and point out flaws in current methods.
引用
收藏
页码:259 / 279
页数:21
相关论文
共 82 条
[71]   Solubilities in water of uracil and its halogenated derivatives [J].
Szterner, P. .
JOURNAL OF CHEMICAL AND ENGINEERING DATA, 2008, 53 (08) :1738-1744
[72]   Vapour pressures, molar enthalpies of sublimation and molar enthalpies of solution in water of five halogenated derivatives of uracil [J].
Szterner, P ;
Kaminski, M ;
Zielenkiewicz, A .
JOURNAL OF CHEMICAL THERMODYNAMICS, 2002, 34 (07) :1005-1012
[73]   DETERMINATION OF VAPOR-PRESSURE FROM DROPLET EVAPORATION KINETICS [J].
TANG, IN ;
MUNKELWITZ, HR .
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 1991, 141 (01) :109-118
[74]   TEMPERATURE-DEPENDENCE OF HENRY LAW CONSTANTS FOR SELECTED CHLOROBENZENES, POLYCHLORINATED-BIPHENYLS AND POLYCYCLIC AROMATIC-HYDROCARBONS [J].
TENHULSCHER, TEM ;
VANDERVELDE, LE ;
BRUGGEMAN, WA .
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 1992, 11 (11) :1595-1603
[75]   Excess chemical potentials, excess partial molar enthalpies, entropies, volumes, and isobaric thermal expansivities of aqueous glycerol at 25°C [J].
To, ECH ;
Davies, JV ;
Tucker, M ;
Westh, P ;
Trandum, C ;
Suh, KSH ;
Koga, Y .
JOURNAL OF SOLUTION CHEMISTRY, 1999, 28 (10) :1137-1157
[76]  
TOMMILA E, 1969, SUOM KEMISTIL, V42, P95
[77]   Thermochemistry of chlorobenzenes and chlorophenols: Ambient temperature vapor pressures and enthalpies of phase transitions [J].
Verevkin, Sergey P. ;
Emel'yanenko, Vladimir N. .
JOURNAL OF CHEMICAL AND ENGINEERING DATA, 2007, 52 (02) :499-510
[78]   MEASUREMENT OF THE VAPOR-PRESSURE OF SEVERAL LOW-VOLATILITY ORGANOCHLORINE CHEMICALS AT LOW-TEMPERATURES WITH A GAS SATURATION METHOD [J].
WANIA, F ;
SHIU, WY ;
MACKAY, D .
JOURNAL OF CHEMICAL AND ENGINEERING DATA, 1994, 39 (03) :572-577
[79]   A review of Henry's law coefficients for chlorine-containing C1 and C2 hydrocarbons [J].
Warneck, Peter .
CHEMOSPHERE, 2007, 69 (03) :347-361
[80]  
Weil L.G., 1974, Z. Wasser Abwasser Forsch, V7, P169