Structure, Function, and Evolution of the Thiomonas spp. Genome

被引：113

作者：

Arsene-Ploetze, Florence ^{[1
,2
]}

Koechler, Sandrine ^{[1
,2
]}

Marchal, Marie ^{[1
,2
]}

Coppee, Jean-Yves ^{[3
]}

Chandler, Michael ^{[4
]}

Bonnefoy, Violaine ^{[5
]}

Brochier-Armanet, Celine ^{[5
]}

Barakat, Mohamed ^{[6
]}

Barbe, Valerie ^{[7
]}

Battaglia-Brunet, Fabienne ^{[8
]}

Bruneel, Odile ^{[9
,10
,11
]}

Bryan, Christopher G. ^{[1
,2
]}

Cleiss-Arnold, Jessica ^{[1
,2
]}

Cruveiller, Stephane ^{[7
,12
]}

Erhardt, Mathieu ^{[13
]}

Heinrich-Salmeron, Audrey ^{[1
,2
]}

Hommais, Florence ^{[14
]}

Joulian, Catherine ^{[8
]}

Krin, Evelyne ^{[15
]}

Lieutaud, Aurelie ^{[5
]}

Lievremont, Didier ^{[1
,2
]}

Michel, Caroline ^{[8
]}

Muller, Daniel ^{[1
,2
]}

Ortet, Philippe ^{[6
]}

Proux, Caroline ^{[3
]}

Siguier, Patricia ^{[4
]}

Roche, David ^{[7
,12
]}

Rouy, Zoe ^{[7
]}

Salvignol, Gregory ^{[12
]}

Slyemi, Djamila ^{[5
]}

Talla, Emmanuel ^{[5
]}

Weiss, Stephanie ^{[1
,2
]}

Weissenbach, Jean ^{[7
,12
]}

Medigue, Claudine ^{[7
,12
]}

Bertin, Philippe N. ^{[1
,2
]}

机构：

[1] CNRS, UMR7156, Strasbourg, France

[2] Univ Strasbourg, Strasbourg, France

[3] Inst Pasteur, Plate Forme Puces ADN, Paris, France

[4] Lab Microbiol & Genet Mol, UMR5100, Toulouse, France

[5] Inst Microbiol Mediterranee, CNRS, UPR9043, Chim Bacterienne Lab, Marseille, France

[6] Univ Aix Marseille 1, CNRS, CEA, Inst Biol Environm & Biotechnol, St Paul Les Durance, France

[7] DSV, CEA, Inst Genom, Evry, France

[8] Bur Rech Geol & Minieres, Orleans, France

[9] IRD, CNRS, UMR 5569, Lab Hydrosci Montpellier, Montpellier, France

[10] Univ Montpellier I, Montpellier, France

[11] Univ Montpellier 2, Montpellier, France

[12] CNRS, UMR8030, Genom Metab Lab Genom Comparat, Evry, France

[13] Univ Strasbourg, CNRS, Inst Biol Mol Plantes, Strasbourg, France

[14] Univ Lyon 1, CNRS, Unite Microbiol Adaptat, INSA,UCB,UMR 5240, F-69622 Villeurbanne, France

[15] Inst Pasteur, URA2171, Paris, France

来源：

PLOS GENETICS | 2010年 / 6卷 / 02期

关键词：

HORIZONTAL GENE-TRANSFER; MINE DRAINAGE CARNOULES; PATHOGENICITY ISLAND; DNA HYBRIDIZATION; BACTERIAL; OXIDATION; STRAINS; PHAGE; ARSENITE; MICROBIOLOGY;

D O I：

10.1371/journal.pgen.1000859

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Bacteria of the Thiomonas genus are ubiquitous in extreme environments, such as arsenic-rich acid mine drainage (AMD). The genome of one of these strains, Thiomonas sp. 3As, was sequenced, annotated, and examined, revealing specific adaptations allowing this bacterium to survive and grow in its highly toxic environment. In order to explore genomic diversity as well as genetic evolution in Thiomonas spp., a comparative genomic hybridization (CGH) approach was used on eight different strains of the Thiomonas genus, including five strains of the same species. Our results suggest that the Thiomonas genome has evolved through the gain or loss of genomic islands and that this evolution is influenced by the specific environmental conditions in which the strains live.

引用

页数：13

共 72 条

[21] A horizontally acquired filamentous phage contributes to the pathogenicity of the plague bacillus [J].

Derbise, Anne ;

Chenal-Francisque, Viviane ;

Pouillot, Flavie ;

Fayolle, Corinne ;

Prevost, Marie-Christine ;

Medigue, Claudine ;

Hinnebusch, Bernard Joseph ;

Carniel, Elisabeth .

MOLECULAR MICROBIOLOGY, 2007, 63 (04) :1145-1157

[22] Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.:: from the strain isolation to the gene study [J].

Duquesne, Katia ;

Lieutaud, Aurelie ;

Ratouchniak, Jeanine ;

Muller, Daniel ;

Lett, Marie-Claire ;

Bonnefoy, Violaine .

ENVIRONMENTAL MICROBIOLOGY, 2008, 10 (01) :228-237

[23] Bacillus subtilis genome diversity [J].

Earl, Ashlee M. ;

Losick, Richard ;

Kolter, Roberto .

JOURNAL OF BACTERIOLOGY, 2007, 189 (03) :1163-1170

[24] The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity [J].

Fraser, Christophe ;

Alm, Eric J. ;

Polz, Martin F. ;

Spratt, Brian G. ;

Hanage, William P. .

SCIENCE, 2009, 323 (5915) :741-746

[25] Prokaryotic sulfur oxidation [J].

Friedrich, CG ;

Bardischewsky, F ;

Rother, D ;

Quentmeier, A ;

Fischer, J .

CURRENT OPINION IN MICROBIOLOGY, 2005, 8 (03) :253-259

[26] Sulfur Metabolism in Phototrophic Sulfur Bacteria [J].

Frigaard, Niels-Ulrik ;

Dahl, Christiane .

ADVANCES IN MICROBIAL PHYSIOLOGY, VOL 54, 2009, 54 :103-200

[27] Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray [J].

Fukiya, S ;

Mizoguchi, H ;

Tobe, T ;

Mori, H .

JOURNAL OF BACTERIOLOGY, 2004, 186 (12) :3911-3921

[28] Pathogenicity islands and the evolution of microbes [J].

Hacker, J ;

Kaper, JB .

ANNUAL REVIEW OF MICROBIOLOGY, 2000, 54 :641-679

[29] Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine [J].

Hallberg, KB ;

Johnson, DB .

SCIENCE OF THE TOTAL ENVIRONMENT, 2005, 338 (1-2) :53-66

[30] Novel acidophiles isolated from moderately acidic mine drainage waters [J].

Hallberg, KB ;

Johnson, DB .

HYDROMETALLURGY, 2003, 71 (1-2) :139-148

← 1 2 3 4 5 6 7 8 →