Ten years of next-generation sequencing technology

被引：1057

作者：

van Dijk, Erwin L. ^{[1
]}

Auger, Helene ^{[1
]}

Jaszczyszyn, Yan ^{[2
]}

Thermes, Claude ^{[1
]}

机构：

[1] CNRS, Ctr Genet Mol, F-91198 Gif Sur Yvette, France

[2] CNRS, Plateforme Integree IMAGIF, F-91198 Gif Sur Yvette, France

来源：

TRENDS IN GENETICS | 2014年 / 30卷 / 09期

关键词：

Next-generation sequencing (NGS); DNA-seq; RNA-seq; ChIP-seq; NGS library preparation; genomics; PROTEIN-DNA INTERACTIONS; RNA-SEQ; IN-VIVO; HIGH-RESOLUTION; NONCODING RNA; REVEALS; IDENTIFICATION; TRANSCRIPTION; DISCOVERY; PROVIDES;

D O I：

10.1016/j.tig.2014.07.001

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Ten years ago next-generation sequencing (NGS) technologies appeared on the market. During the past decade, tremendous progress has been made in terms of speed, read length, and throughput, along with a sharp reduction in per-base cost. Together, these advances democratized NGS and paved the way for the development of a large number of novel NGS applications in basic science as well as in translational research areas such as clinical diagnostics, agrigenomics, and forensic science. Here we provide an overview of the evolution of NGS and discuss the most significant improvements in sequencing technologies and library preparation protocols. We also explore the current landscape of NGS applications and provide a perspective for future developments.

引用

页码：418 / 426

页数：9

共 79 条

[61]

Rougemont J, 2012, METHODS MOL BIOL, V786, P263, DOI 10.1007/978-1-61779-292-2_16

[62] Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts [J].

Sanford, Jeremy R. ;

Wang, Xin ;

Mort, Matthew ;

VanDuyn, Natalia ;

Cooper, David N. ;

Mooney, Sean D. ;

Edenberg, Howard J. ;

Liu, Yunlong .

GENOME RESEARCH, 2009, 19 (03) :381-394

[63] DNA SEQUENCING WITH CHAIN-TERMINATING INHIBITORS [J].

SANGER, F ;

NICKLEN, S ;

COULSON, AR .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (12) :5463-5467

[64] Rapid Whole-Genome Sequencing for Genetic Disease Diagnosis in Neonatal Intensive Care Units [J].

Saunders, Carol Jean ;

Miller, Neil Andrew ;

Soden, Sarah Elizabeth ;

Dinwiddie, Darrell Lee ;

Noll, Aaron ;

Abu Alnadi, Noor ;

Andraws, Nevene ;

Patterson, Melanie LeAnn ;

Krivohlavek, Lisa Ann ;

Fellis, Joel ;

Humphray, Sean ;

Saffrey, Peter ;

Kingsbury, Zoya ;

Weir, Jacqueline Claire ;

Betley, Jason ;

Grocock, Russell James ;

Margulies, Elliott Harrison ;

Farrow, Emily Gwendolyn ;

Artman, Michael ;

Safina, Nicole Pauline ;

Petrikin, Joshua Erin ;

Hall, Kevin Peter ;

Kingsmore, Stephen Francis .

SCIENCE TRANSLATIONAL MEDICINE, 2012, 4 (154)

[65] A window into third-generation sequencing [J].

Schadt, Eric E. ;

Turner, Steve ;

Kasarskis, Andrew .

HUMAN MOLECULAR GENETICS, 2010, 19 :R227-R240

[66] How to get genomes at one ten-thousandth the cost [J].

Schloss, Jeffery A. .

NATURE BIOTECHNOLOGY, 2008, 26 (10) :1113-1115

[67] Single-cell RNA-seq reveals dynamic paracrine control of cellular variation [J].

Shalek, Alex K. ;

Satija, Rahul ;

Shuga, Joe ;

Trombetta, John J. ;

Gennert, Dave ;

Lu, Diana ;

Chen, Peilin ;

Gertner, Rona S. ;

Gaublomme, Jellert T. ;

Yosef, Nir ;

Schwartz, Schraga ;

Fowler, Brian ;

Weaver, Suzanne ;

Wang, Jing ;

Wang, Xiaohui ;

Ding, Ruihua ;

Raychowdhury, Raktima ;

Friedman, Nir ;

Hacohen, Nir ;

Park, Hongkun ;

May, Andrew P. ;

Regev, Aviv .

NATURE, 2014, 510 (7505) :363-+

[68] Accurate multiplex polony sequencing of an evolved bacterial genome [J].

Shendure, J ;

Porreca, GJ ;

Reppas, NB ;

Lin, XX ;

McCutcheon, JP ;

Rosenbaum, AM ;

Wang, MD ;

Zhang, K ;

Mitra, RD ;

Church, GM .

SCIENCE, 2005, 309 (5741) :1728-1732

[69] Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum [J].

Siegel, T. Nicolai ;

Hon, Chung-Chau ;

Zhang, Qinfeng ;

Lopez-Rubio, Jose-Juan ;

Scheidig-Benatar, Christine ;

Martins, Rafael M. ;

Sismeiro, Odile ;

Coppee, Jean-Yves ;

Scherf, Artur .

BMC GENOMICS, 2014, 15

[70] The genomic binding sites of a noncoding RNA [J].

Simon, Matthew D. ;

Wang, Charlotte I. ;

Kharchenko, Peter V. ;

West, Jason A. ;

Chapman, Brad A. ;

Alekseyenko, Artyom A. ;

Borowsky, Mark L. ;

Kuroda, Mitzi I. ;

Kingston, Robert E. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (51) :20497-20502

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