The apoptosis database

被引:25
作者
Doctor, KS
Reed, JC
Godzik, A
Bourne, PE
机构
[1] Burnham Inst, La Jolla, CA 92037 USA
[2] Univ Calif San Diego, San Diego Supercomp Ctr, La Jolla, CA 92093 USA
基金
美国国家科学基金会;
关键词
apoptosis; programmed cell death; relational database; bioinformatics; homology; protein families; protein domains; domain classification;
D O I
10.1038/sj.cdd.4401230
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The apoptosis database is a public resource for researchers and students interested in the molecular biology of apoptosis. The resource provides functional annotation, literature references, diagrams/images, and alternative nomenclatures on a set of proteins having 'apoptotic domains'. These are the distinctive domains that are often, if not exclusively, found in proteins involved in apoptosis. The initial choice of proteins to be included is defined by apoptosis experts and bioinformatics tools. Users can browse through the web accessible lists of domains, proteins containing these domains and their associated homologs. The database can also be searched by sequence homology using basic local alignment search tool, text word matches of the annotation, and identifiers for specific records. The resource is available at http:// www.apoptosis-db.org and is updated on a regular basis.
引用
收藏
页码:621 / 633
页数:13
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