Construction and validation of a Parkinson's disease mutation genotyping array for the Parkin gene

被引:14
作者
Clark, Lorraine N.
Haamer, Eneli
Mejia-Santana, Helen
Harris, Juliette
Lesage, Suzanne
Durr, Alexandra
Janin, Sabine
Hedrich, Katja
Louis, Elan D.
Cote, Lucien J.
Andrews, Howard
Fahn, Stanley
Waters, Cheryl
Ford, Blair
Frucht, Steven
Scott, William
Klein, Christine
Brice, Alexis
Roomere, Hanno
Ottman, Ruth
Marder, Karen
机构
[1] Columbia Univ, Dept Pathol, New York, NY 10032 USA
[2] Columbia Univ, Taub Inst Res Alzheimers Dis & Aging Brain, New York, NY USA
[3] Asper Biotech, Tartu, Estonia
[4] Columbia Univ, Gertrude H Sergievsky Ctr, New York, NY 10027 USA
[5] Columbia Univ, Coll Phys & Surg, Dept Neurol, New York, NY USA
[6] Hop La Pitie Salpetriere, INSERM, U679, AP HP, Paris, France
[7] Univ Paris 06, Fac Med, Paris, France
[8] Univ Lubeck, Dept Neurol, Lubeck, Germany
[9] Columbia Univ, Coll Phys & Surg, Dept Psychiat, New York, NY USA
[10] Duke Univ, Med Ctr, Ctr Human Genet, Durham, NC USA
[11] Hop La Pitie Salpetriere, Dept Genet Cytogenet & Embryol, AP HP, Paris, France
[12] Columbia Univ, Mailman Sch Publ Hlth, Dept Epidemiol, New York, NY USA
[13] Columbia Univ, Dept Epidemiol Brain Disorders, New York State Psychiat Inst, New York, NY USA
关键词
Parkin; Parkinson's disease; mutation; genotyping array; chip; genetic epidemiology;
D O I
10.1002/mds.21419
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Parkin mutations account for the majority of familial and sporadic early onset Parkinson's disease (EOPD) cases with a known genetic association. More than 100 mutations have been described in the Parkin gene that includes homozygous, compound heterozygous, and single heterozygous mutations. We have designed a Parkin mutation genotyping array (gene chip) that includes published Parkin sequence variants and allows their simultaneous detection. The chip was validated by screening 85 PD cases and 47 controls previously tested for Parkin mutations. Similar genotyping microarrays have been developed for other genetically heterogeneous diseases including age-related macular degeneration. Here, we show the utility of a genotyping array for Parkinson's disease by analysis of 60 subjects from the Genetic Epidemiology of Parkinson Disease (GEPD) study that includes 15 early-onset PD case probands and 45 relatives. (C) 2007 Movement Disorder Society.
引用
收藏
页码:932 / 937
页数:6
相关论文
共 40 条
[31]   parkin mutation analysis in clinic patients with early-onset Parkinson's disease [J].
Poorkaj, P ;
Nutt, JG ;
James, D ;
Gancher, S ;
Bird, TD ;
Steinbart, E ;
Schellenberg, GD ;
Payami, H .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2004, 129A (01) :44-50
[32]   Genotype-phenotype correlation in Italian families with Stargardt disease [J].
Simonelli, F ;
Testa, F ;
Zernant, J ;
Nesti, A ;
Rossi, S ;
Allikmets, R ;
Rinaldi, E .
OPHTHALMIC RESEARCH, 2005, 37 (03) :159-167
[33]   α-synuclein locus triplication causes Parkinson's disease [J].
Singleton, AB ;
Farrer, M ;
Johnson, J ;
Singleton, A ;
Hague, S ;
Kachergus, J ;
Hulihan, M ;
Peuralinna, T ;
Dutra, A ;
Nussbaum, R ;
Lincoln, S ;
Crawley, A ;
Hanson, M ;
Maraganore, D ;
Adler, C ;
Cookson, MR ;
Muenter, M ;
Baptista, M ;
Miller, D ;
Blancato, J ;
Hardy, J ;
Gwinn-Hardy, K .
SCIENCE, 2003, 302 (5646) :841-841
[34]   Influence of heterozygosity for Parkin mutation on onset age in familial Parkinson disease : The GenePD study [J].
Sun, Mei ;
Latourelle, Jeanne C. ;
Wooten, Frederick ;
Lew, Mark F. ;
Klein, Christine ;
Shill, Holly A. ;
Golbe, Lawrence I. ;
Mark, Margery H. ;
Racette, Brad A. ;
Perlmutter, Joel S. ;
Parsian, Abbas ;
Guttman, Mark ;
Nicholson, Garth ;
Xu, Gang ;
Wilk, Jemma B. ;
Saint-Hilaire, Marie H. ;
DeStefano, Anita L. ;
Prakash, Ranjana ;
Williamson, Sally ;
Suchowersky, Oksana ;
Labelle, Nancy ;
Growdon, John H. ;
Singer, Carlos ;
Watts, Ray L. ;
Goldwurm, Stefano ;
Pezzoli, Gianni ;
Baker, Kenneth B. ;
Pramstaller, Peter P. ;
Burn, David J. ;
Chinnery, Patrick F. ;
Sherman, Scott ;
Vieregge, Peter ;
Litvan, Irene ;
Gillis, Tammy ;
MacDonald, Marcy E. ;
Myers, Richard H. ;
Gusella, James F. .
ARCHIVES OF NEUROLOGY, 2006, 63 (06) :826-832
[35]   Evaluating the arrayed primer extension resequencing assay of TP53 tumor suppressor gene [J].
Tonisson, N ;
Zernant, J ;
Kurg, A ;
Pavel, H ;
Slavin, G ;
Roomere, H ;
Meiel, A ;
Hainaut, P ;
Metspalu, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (08) :5503-5508
[36]   Hereditary early-onset Parkinson's disease caused by mutations in PINK1 [J].
Valente, EM ;
Abou-Sleiman, PM ;
Caputo, V ;
Muqit, MMK ;
Harvey, K ;
Gispert, S ;
Ali, Z ;
Del Turco, D ;
Bentivoglio, AR ;
Healy, DG ;
Albanese, A ;
Nussbaum, R ;
González-Maldonaldo, R ;
Deller, T ;
Salvi, S ;
Cortelli, P ;
Gilks, WP ;
Latchman, DS ;
Harvey, RJ ;
Dallapiccola, B ;
Auburger, G ;
Wood, NW .
SCIENCE, 2004, 304 (5674) :1158-1160
[37]   Complex relationship between parkin mutations and Parkinson disease [J].
West, A ;
Periquet, M ;
Lincoln, S ;
Lücking, CB ;
Nicholl, D ;
Bonifati, V ;
Rawal, N ;
Gasser, T ;
Lohmann, E ;
Deleuze, JF ;
Maraganore, D ;
Levey, A ;
Wood, N ;
Dürr, A ;
Hardy, J ;
Brice, A ;
Farrer, M .
AMERICAN JOURNAL OF MEDICAL GENETICS, 2002, 114 (05) :584-591
[38]   Parkin mutations and early-onset parkinsonism in a Taiwanese cohort [J].
Wu, RM ;
Bounds, R ;
Lincoln, S ;
Hulihan, M ;
Lin, CH ;
Hwu, WL ;
Chen, J ;
Gwinn-Hardy, K ;
Farrer, M .
ARCHIVES OF NEUROLOGY, 2005, 62 (01) :82-87
[39]   Genotyping microarray (disease chip) for Leber congenital amaurosis:: Detection of modifier alleles [J].
Zernant, J ;
Külm, M ;
Dharmaraj, S ;
den Hollander, AI ;
Perrault, I ;
Preising, MN ;
Lorenz, B ;
Kaplan, J ;
Cremers, FPM ;
Maumenee, I ;
Koenekoop, RK ;
Allikmets, R .
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2005, 46 (09) :3052-3059
[40]   Mutations in LRRK2 cause autosomal-dominant Parkinsonism with pleomorphic pathology [J].
Zimprich, A ;
Biskup, S ;
Leitner, P ;
Lichtner, P ;
Farrer, M ;
Lincoln, S ;
Kachergus, J ;
Hulihan, M ;
Uitti, RJ ;
Calne, DB ;
Stoessl, AJ ;
Pfeiffer, RF ;
Patenge, N ;
Carbajal, IC ;
Vieregge, P ;
Asmus, F ;
Müller-Myhsok, B ;
Dickson, DW ;
Meitinger, T ;
Strom, TM ;
Wszolek, ZK ;
Gasser, T .
NEURON, 2004, 44 (04) :601-607