Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis

被引：97

作者：

Randolph B Caldwell

Andrzej M Kierzek

Hiroshi Arakawa

Yuri Bezzubov

Jolanta Zaim

Petra Fiedler

Stefan Kutter

Artem Blagodatski

Diyana Kostovska

Marek Koter

Jiri Plachy

Piero Carninci

Yoshihide Hayashizaki

Jean-Marie Buerstedde

机构：

[1] GSF,Institute of Molecular Radiobiology

[2] Polish Academy of Sciences,Laboratory of Systems Biology Institute of Biochemistry and Biophysics

[3] University of Surrey,School of Biomedical and Molecular Sciences

[4] Institute of Molecular Genetics,Academy of Sciences of the Czech Republic

[5] RIKEN Tsukuba Institute,Laboratory for Genome Exploration Research Project, Genomic Sciences Center and Genome Science Laboratory

[6] RIKEN Yokohama Institute,Genome Exploration Research Group, RIKEN Genomic Sciences Center

来源：

Genome Biology | / 6卷 / 1期

关键词：

Start Codon; cDNA Insert; Translation Start Codon; Alternative Start Codon; Chicken Genome Sequence;

D O I：

10.1186/gb-2004-6-1-r6

中图分类号：

学科分类号：

摘要：

A large number of cDNA inserts were sequenced from a high-quality library of chicken bursal lymphocyte cDNAs. Comparisons to public gene databases indicate that the cDNA collection represents more than 2,000 new, full-length transcripts. This resource defines the structure and the coding potential of a large fraction of B-cell specific and housekeeping genes whose function can be analyzed by disruption in the chicken DT40 B-cell line.

引用

共 143 条

[21]

Yamaguchi-Iwai Y(2002)Pushing the limits of the scanning mechanism for initiation of translation. Gene 299 1-722

[22]

Shinohara A(2004)WebLogo: a sequence logo generator. Genome Res 14 1188-D141

[23]

Takeda S(2004)An overview of Ensembl. Genet Res 14 925-D261

[24]

Imanishi T(2004)A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 432 717-318

[25]

Itoh T(2004)The Pfam protein families database. Nucleic Acids Res 32 (Database issue) D138-44

[26]

Suzuki Y(2004)The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 32 (Database issue) D258-322

[27]

O'Donovan C(2003)The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 31 315-undefined

[28]

Fukuchi S(1999)High-efficiency full-length cDNA cloning. Methods Enzymol 303 19-undefined

[29]

Koyanagi KO(2001)FOUNTAIN: a JAVA open-source package to assist large sequencing projects. BMC Bioinformatics 2 6-undefined

[30]

Barrero RA(2001)Sequence assembly and finishing methods. Methods Biochem Anal 43 303-undefined

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