MADMAX - Management and analysis database for multiple similar to omics experiments

被引：124

作者：

Lin, Ke ^{[1
,2
]}

Kools, Harrie ^{[3
]}

de Groot, Philip J. ^{[4
]}

Gavai, Anand K. ^{[1
,5
]}

Basnet, Ram K. ^{[2
]}

Cheng, Feng ^{[6
]}

Wu, Jian ^{[6
]}

Wang, Xiaowu ^{[6
]}

Lommen, Arjen ^{[3
]}

Hooiveld, Guido J. E. J. ^{[4
]}

Bonnema, Guusje ^{[2
]}

Visser, Richard G. F. ^{[2
]}

Muller, Michael R. ^{[4
]}

Leunissen, Jack A. M. ^{[1
,5
]}

机构：

[1] Lab Bioinformat, POB 569, NL-6700 AN Wageningen, Netherlands

[2] Lab Plant Breeding, NL-6700 AN Wageningen, Netherlands

[3] RIKILT, NL-6700 AE Wageningen, Netherlands

[4] Nutr Metab & Genom Grp, NL-6700 AA Wageningen, Netherlands

[5] Netherlands Bioinformat Ctr, NL-6500 HB Nijmegen, Netherlands

[6] Chinese Acad Agr Sci, Inst Vegetable & Flowers, Beijing 100081, Peoples R China

来源：

JOURNAL OF INTEGRATIVE BIOINFORMATICS | 2011年 / 8卷 / 02期

关键词：

D O I：

10.2390/biecoll-jib-2011-160

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The rapid increase of similar to omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different similar to omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex similar to omics datasets. In addition, analysis results (such as lists of genes) can be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part, which is linked to the different analysis pipelines. A pilot study of different type of similar to omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.

引用

页数：16

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