THEORETICAL-EXAMINATION OF THE MECHANISM OF ALDOSE KETOSE ISOMERIZATION

被引:35
作者
ZHENG, YJ
MERZ, KM
FARBER, GK
机构
[1] 152 Davey Laboratory, Department of Chemistry, Pennsylvania State University, University Park
来源
PROTEIN ENGINEERING | 1993年 / 6卷 / 05期
关键词
COMPUTATIONAL CHEMISTRY; ENZYME MECHANISM; METAL ION; SUGAR; XYLOSE ISOMERASE;
D O I
10.1093/protein/6.5.479
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Two mechanisms for an aldose-ketose isomerization have been examined using high level ab initio and semiempirical molecular orbital methods. The proton transfer pathway via an enediol intermediate is shown to be favored in the absence of a metal ion, while the hydride transfer pathway becomes favored in the presence of a metal ion. Our calculations explain why the proton transfer pathway is operative in most aldose-ketose isomerization reactions. These calculations also provide further support for the previously proposed metal ion-mediated hydride transfer mechanism for xylose isomerase.
引用
收藏
页码:479 / 484
页数:6
相关论文
共 21 条
[1]   COMPUTER-SIMULATION AND ANALYSIS OF THE REACTION PATHWAY OF TRIOSEPHOSPHATE ISOMERASE [J].
BASH, PA ;
FIELD, MJ ;
DAVENPORT, RC ;
PETSKO, GA ;
RINGE, D ;
KARPLUS, M .
BIOCHEMISTRY, 1991, 30 (24) :5826-5832
[2]   MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING-OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT [J].
COLLYER, CA ;
HENRICK, K ;
BLOW, DM .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 212 (01) :211-235
[3]  
De Bruijn J. M., 1986, SUGAR TECHN REV, V13, P21
[4]  
de Bruyn C.A.L., 1895, RECL TRAV CHIM PAY-B, V14, P203
[5]  
DEBRUYN CAL, 1897, RECL TRAV CHIM PAY B, V16, P257
[6]   THE 3.0 A CRYSTAL-STRUCTURE OF XYLOSE ISOMERASE FROM STREPTOMYCES-OLIVOCHROMOGENES [J].
FARBER, GK ;
PETSKO, GA ;
RINGE, D .
PROTEIN ENGINEERING, 1987, 1 (06) :459-466
[7]   CRYSTALLOGRAPHIC STUDIES OF THE MECHANISM OF XYLOSE ISOMERASE [J].
FARBER, GK ;
GLASFELD, A ;
TIRABY, G ;
RINGE, D ;
PETSKO, GA .
BIOCHEMISTRY, 1989, 28 (18) :7289-7297
[8]  
FIESER LF, 1956, ORGANIC CHEM, P360
[9]   EVIDENCE FOR A HYDRIDE SHIFT IN ALKALINE REARRANGEMENTS OF D-RIBOSE [J].
GLEASON, WB ;
BARKER, R .
CANADIAN JOURNAL OF CHEMISTRY, 1971, 49 (09) :1433-&
[10]   STUDIES ON MECHANISM OF INTERCONVERSION OF D-GLUCOSE, D-MANNOSE, AND D-FRUCTOSE IN ACID SOLUTION [J].
HARRIS, DW ;
FEATHER, MS .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1975, 97 (01) :178-182