MISSING MARKERS WHEN ESTIMATING QUANTITATIVE TRAIT LOCI USING REGRESSION MAPPING

被引:38
作者
MARTINEZ, O [1 ]
CURNOW, RN [1 ]
机构
[1] UNIV READING,DEPT APPL STAT,READING RG6 2FN,BERKS,ENGLAND
关键词
INTERVAL MAPPING; MISSING MARKERS; MOLECULAR MARKERS; QTL; REGRESSION MAPPING;
D O I
10.1038/hdy.1994.120
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
When using molecular markers to estimate the locations and sizes of effects of QTLs in plant populations a common problem is the loss of marker genotypes for many individuals. Here we present a method that uses the information from individuals with missing marker genotypes when fitting regression mapping models using two or three neighbouring markers. The approach uses other nearby markers to recover information from the individuals with missing markers. The method is presented in detail for the two markers regression mapping technique applied to backcross or double haploid populations. The method is exemplified with a simulated data set and with data on a quantitative character in double haploid lines of barley. Generalizations of the method to three markers regression mapping models and to F-2 populations are outlined.
引用
收藏
页码:198 / 206
页数:9
相关论文
共 11 条
[1]   INTERVAL MAPPING IN THE ANALYSIS OF NONADDITIVE QUANTITATIVE TRAIT LOCI [J].
CARBONELL, EA ;
GERIG, TM ;
BALANSARD, E ;
ASINS, MJ .
BIOMETRICS, 1992, 48 (01) :305-315
[2]   A SIMPLE REGRESSION METHOD FOR MAPPING QUANTITATIVE TRAIT LOCI IN LINE CROSSES USING FLANKING MARKERS [J].
HALEY, CS ;
KNOTT, SA .
HEREDITY, 1992, 69 :315-324
[3]   A GENERAL MIXTURE MODEL FOR MAPPING QUANTITATIVE TRAIT LOCI BY USING MOLECULAR MARKERS [J].
JANSEN, RC .
THEORETICAL AND APPLIED GENETICS, 1992, 85 (2-3) :252-260
[4]   MAPPING QUANTITATIVE TRAIT LOCI USING MOLECULAR MARKER LINKAGE MAPS [J].
KNAPP, SJ ;
BRIDGES, WC ;
BIRKES, D .
THEORETICAL AND APPLIED GENETICS, 1990, 79 (05) :583-592
[5]  
LANDER ES, 1989, GENETICS, V121, P185
[6]   MAXIMUM-LIKELIHOOD-ESTIMATION OF LINKAGE BETWEEN A MARKER GENE AND A QUANTITATIVE TRAIT LOCUS .2. APPLICATION TO BACKCROSS AND DOUBLED HAPLOID POPULATIONS [J].
LUO, ZW ;
KEARSEY, MJ .
HEREDITY, 1991, 66 :117-124
[7]   MAXIMUM-LIKELIHOOD-ESTIMATION OF LINKAGE BETWEEN A MARKER GENE AND A QUANTITATIVE LOCUS [J].
LUO, ZW ;
KEARSEY, MJ .
HEREDITY, 1989, 63 :401-408
[8]   ESTIMATING THE LOCATIONS AND THE SIZES OF THE EFFECTS OF QUANTITATIVE TRAIT LOCI USING FLANKING MARKERS [J].
MARTINEZ, O ;
CURNOW, RN .
THEORETICAL AND APPLIED GENETICS, 1992, 85 (04) :480-488
[10]   MAXIMUM-LIKELIHOOD TECHNIQUES FOR THE MAPPING AND ANALYSIS OF QUANTITATIVE TRAIT LOCI WITH THE AID OF GENETIC-MARKERS [J].
WELLER, JI .
BIOMETRICS, 1986, 42 (03) :627-640