COMPUTATIONAL STRATEGIES PERTINENT TO NMR SOLUTION STRUCTURE DETERMINATION

被引:19
作者
JAMES, TL
机构
[1] Department of Pharmaceutical Chemistry, University of California, San Francisco
基金
美国国家卫生研究院;
关键词
D O I
10.1016/S0959-440X(94)90320-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Experimental NMR data provide the basis for determining the three-dimensional structures of biopolymers in solution. Most work has been conducted on protein structure determination, but there have also been efforts to obtain meaningful nucleic acid and carbohydrate structures. Analysis of the targe quantity of data obtained by NMR techniques requires much more time and effort than acquisition of the data. Advances in automating resonance assignment procedures and in enhancing the quality and quantity of structural restraints available from the experimental data continue to be made. There are further improvements in computational methods used to search conformational space to yield art possible structures consistent with the experimental restraints and to optimize resulting structures. Recently there has also been more consideration of the accuracy and precision of the structures obtained.
引用
收藏
页码:275 / 284
页数:10
相关论文
共 93 条
[1]   MOLECULAR-DYNAMICS SIMULATIONS ON HIPIP FROM CHROMATIUM-VINOSUM AND COMPARISON WITH NMR DATA [J].
BANCI, L ;
BERTINI, I ;
CARLONI, P ;
LUCHINAT, C ;
ORIOLI, PL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (27) :10683-10689
[2]   A COMPARISON OF THE ROESY AND NOESY EXPERIMENTS FOR LARGE MOLECULES, WITH APPLICATION TO NUCLEIC-ACIDS [J].
BAUER, CJ ;
FRENKIEL, TA ;
LANE, AN .
JOURNAL OF MAGNETIC RESONANCE, 1990, 87 (01) :144-152
[3]   FULL SIMULATION OF ROESY, INCLUDING THE HARTMANN-HAHN EFFECTS [J].
BAZZO, R ;
EDGE, CJ ;
WORMALD, MR ;
RADEMACHER, TW ;
DWEK, RA .
CHEMICAL PHYSICS LETTERS, 1990, 174 (3-4) :313-319
[4]   COMPUTER-ASSISTED ASSIGNMENT OF MULTIDIMENSIONAL NMR-SPECTRA OF PROTEINS - APPLICATION TO 3D NOESY-HMQC AND TOCSY-HMQC SPECTRA [J].
BERNSTEIN, R ;
CIESLAR, C ;
ROSS, A ;
OSCHKINAT, H ;
FREUND, J ;
HOLAK, TA .
JOURNAL OF BIOMOLECULAR NMR, 1993, 3 (02) :245-251
[5]   HIGH-DIMENSIONAL POTENTIAL FOR THE ASSIGNMENT OF AMBIGUOUS NOE CONNECTIVITIES [J].
BERNSTEIN, R ;
SCHNUCHEL, A ;
CIESLAR, C ;
HOLAK, TA .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1993, 102 (01) :116-119
[6]   DETERMINATION OF BIOMOLECULAR STRUCTURES FROM PROTON-PROTON NOES USING A RELAXATION MATRIX APPROACH [J].
BOELENS, R ;
KONING, TMG ;
KAPTEIN, R .
JOURNAL OF MOLECULAR STRUCTURE, 1988, 173 :299-311
[7]   ENSEMBLE ITERATIVE RELAXATION MATRIX APPROACH - A NEW NMR REFINEMENT PROTOCOL APPLIED TO THE SOLUTION STRUCTURE OF CRAMBIN [J].
BONVIN, AMJJ ;
RULLMANN, JAC ;
LAMERICHS, RMJN ;
BOELENS, R ;
KAPTEIN, R .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1993, 15 (04) :385-400
[8]   COMATOSE, A METHOD FOR CONSTRAINED REFINEMENT OF MACROMOLECULAR STRUCTURE BASED ON TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT SPECTRA [J].
BORGIAS, BA ;
JAMES, TL .
JOURNAL OF MAGNETIC RESONANCE, 1988, 79 (03) :493-512
[9]   MARDIGRAS - A PROCEDURE FOR MATRIX ANALYSIS OF RELAXATION FOR DISCERNING GEOMETRY OF AN AQUEOUS STRUCTURE [J].
BORGIAS, BA ;
JAMES, TL .
JOURNAL OF MAGNETIC RESONANCE, 1990, 87 (03) :475-487
[10]   ASSESSING THE QUALITY OF SOLUTION NUCLEAR-MAGNETIC-RESONANCE STRUCTURES BY COMPLETE CROSS-VALIDATION [J].
BRUNGER, AT ;
CLORE, GM ;
GRONENBORN, AM ;
SAFFRICH, R ;
NILGES, M .
SCIENCE, 1993, 261 (5119) :328-331