COMPUTATIONAL STRATEGIES PERTINENT TO NMR SOLUTION STRUCTURE DETERMINATION

被引:19
作者
JAMES, TL
机构
[1] Department of Pharmaceutical Chemistry, University of California, San Francisco
基金
美国国家卫生研究院;
关键词
D O I
10.1016/S0959-440X(94)90320-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Experimental NMR data provide the basis for determining the three-dimensional structures of biopolymers in solution. Most work has been conducted on protein structure determination, but there have also been efforts to obtain meaningful nucleic acid and carbohydrate structures. Analysis of the targe quantity of data obtained by NMR techniques requires much more time and effort than acquisition of the data. Advances in automating resonance assignment procedures and in enhancing the quality and quantity of structural restraints available from the experimental data continue to be made. There are further improvements in computational methods used to search conformational space to yield art possible structures consistent with the experimental restraints and to optimize resulting structures. Recently there has also been more consideration of the accuracy and precision of the structures obtained.
引用
收藏
页码:275 / 284
页数:10
相关论文
共 93 条
[81]   CALCULATION OF INTERPROTON DISTANCES FROM NOE INTENSITIES - A RELAXATION MATRIX APPROACH WITHOUT REQUIREMENT OF A MOLECULAR-MODEL [J].
VANDEVEN, FJM ;
BLOMMERS, MJJ ;
SCHOUTEN, RE ;
HILBERS, CW .
JOURNAL OF MAGNETIC RESONANCE, 1991, 94 (01) :140-151
[82]   MOLECULAR-DYNAMICS STUDIES OF PROTEINS [J].
VANGUNSTEREN, WF .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1993, 3 (02) :277-281
[83]   CONFORMATIONAL SEARCH BY POTENTIAL-ENERGY ANNEALING - ALGORITHM AND APPLICATION TO CYCLOSPORINE-A [J].
VANSCHAIK, RC ;
VANGUNSTEREN, WF ;
BERENDSEN, HJC .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1992, 6 (02) :97-112
[84]  
WAGNER G, 1993, J BIOMOL NMR, V3, P375
[85]   NMR STRUCTURE DETERMINATION IN SOLUTION - A CRITIQUE AND COMPARISON WITH X-RAY CRYSTALLOGRAPHY [J].
WAGNER, G ;
HYBERTS, SG ;
HAVEL, TF .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 1992, 21 :167-198
[86]   HIPS, A HYBRID SELF-ADAPTING EXPERT-SYSTEM FOR NUCLEAR-MAGNETIC-RESONANCE SPECTRUM INTERPRETATION USING GENETIC ALGORITHMS [J].
WEHRENS, R ;
LUCASIUS, C ;
BUYDENS, L ;
KATEMAN, G .
ANALYTICA CHIMICA ACTA, 1993, 277 (02) :313-324
[87]   SOLUTION STRUCTURE OF THE OCTAMER MOTIF IN IMMUNOGLOBULIN GENES VIA RESTRAINED MOLECULAR-DYNAMICS CALCULATIONS [J].
WEISZ, K ;
SHAFER, RH ;
EGAN, W ;
JAMES, TL .
BIOCHEMISTRY, 1994, 33 (01) :354-366
[88]   SIMULATION OF TWO-DIMENSIONAL NMR EXPERIMENTS USING NUMERICAL DENSITY-MATRIX CALCULATIONS [J].
WIDMER, H ;
WUTHRICH, K .
JOURNAL OF MAGNETIC RESONANCE, 1986, 70 (02) :270-279
[89]  
Wijmenga S. S., 1993, NMR MACROMOLECULES P, P217
[90]   RELATIONSHIP BETWEEN NUCLEAR-MAGNETIC-RESONANCE CHEMICAL-SHIFT AND PROTEIN SECONDARY STRUCTURE [J].
WISHART, DS ;
SYKES, BD ;
RICHARDS, FM .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 222 (02) :311-333