CDNA EXPRESSED SEQUENCE TAGS OF TRYPANOSOMA-BRUCEI-RHODESIENSE PROVIDE NEW INSIGHTS INTO THE BIOLOGY OF THE PARASITE

被引:98
作者
ELSAYED, NMA
ALARCON, CM
BECK, JC
SHEFFIELD, VC
DONELSON, JE
机构
[1] UNIV IOWA,COLL MED,HOWARD HUGHES MED INST,IOWA CITY,IA 52242
[2] UNIV IOWA,DEPT BIOCHEM,IOWA CITY,IA 52242
[3] UNIV IOWA,HUMAN NUTR PROGRAM,IOWA CITY,IA 52242
[4] UNIV IOWA,DEPT PEDIAT,IOWA CITY,IA 52242
关键词
TRYPANOSOMA BRUCEI RHODESIENSE; EXPRESSED SEQUENCE TAG; CDNA;
D O I
10.1016/0166-6851(95)00098-L
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A total of 518 expressed sequence tags (ESTs) have been generated from clones randomly selected from a cDNA library and a spliced leader sub-library of a Trypanosoma brucei rhodesiense bloodstream clone. 205 (39%) of the clones were identified based on matches to 113 unique genes in the public databases. Of these, 71 cDNAs display significant similarities to genes in unrelated organisms encoding metabolic enzymes, signal transduction proteins, transcription factors, ribosomal proteins, histones, a proliferation-associated protein and thimet oligopeptidase, among others. 313 of the cDNAs are not related to any other sequences in the databases. These cDNA ESTs provide new avenues of research for exploring both the novel trypanosome-specific genes and the genome organization of this parasite, as well as a resource for identifying trypanosome homologs to genes expressed in other organisms.
引用
收藏
页码:75 / 90
页数:16
相关论文
共 52 条
[1]   3,400 NEW EXPRESSED SEQUENCE TAGS IDENTIFY DIVERSITY OF TRANSCRIPTS IN HUMAN BRAIN [J].
ADAMS, MD ;
KERLAVAGE, AR ;
FIELDS, C ;
VENTER, JC .
NATURE GENETICS, 1993, 4 (03) :256-267
[2]   RAPID CDNA SEQUENCING (EXPRESSED SEQUENCE TAGS) FROM A DIRECTIONALLY CLONED HUMAN INFANT BRAIN CDNA LIBRARY [J].
ADAMS, MD ;
SOARES, MB ;
KERLAVAGE, AR ;
FIELDS, C ;
VENTER, JC .
NATURE GENETICS, 1993, 4 (04) :373-386
[3]   SEQUENCE IDENTIFICATION OF 2,375 HUMAN BRAIN GENES [J].
ADAMS, MD ;
DUBNICK, M ;
KERLAVAGE, AR ;
MORENO, R ;
KELLEY, JM ;
UTTERBACK, TR ;
NAGLE, JW ;
FIELDS, C ;
VENTER, JC .
NATURE, 1992, 355 (6361) :632-634
[4]   COMPLEMENTARY-DNA SEQUENCING - EXPRESSED SEQUENCE TAGS AND HUMAN GENOME PROJECT [J].
ADAMS, MD ;
KELLEY, JM ;
GOCAYNE, JD ;
DUBNICK, M ;
POLYMEROPOULOS, MH ;
XIAO, H ;
MERRIL, CR ;
WU, A ;
OLDE, B ;
MORENO, RF ;
KERLAVAGE, AR ;
MCCOMBIE, WR ;
VENTER, JC .
SCIENCE, 1991, 252 (5013) :1651-1656
[5]   A MONOCISTRONIC TRANSCRIPT FOR A TRYPANOSOME VARIANT SURFACE GLYCOPROTEIN [J].
ALARCON, CM ;
SON, HJ ;
HALL, T ;
DONELSON, JE .
MOLECULAR AND CELLULAR BIOLOGY, 1994, 14 (08) :5579-5591
[6]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[7]   POLYAMINE METABOLISM - A POTENTIAL THERAPEUTIC TARGET IN TRYPANOSOMES [J].
BACCHI, CJ ;
NATHAN, HC ;
HUTNER, SH .
SCIENCE, 1980, 210 (4467) :332-334
[8]   MAJOR TRANSCRIPT OF THE FRAMESHIFTED COXLL GENE FROM TRYPANOSOME MITOCHONDRIA CONTAINS 4 NUCLEOTIDES THAT ARE NOT ENCODED IN THE DNA [J].
BENNE, R ;
VANDENBURG, J ;
BRAKENHOFF, JPJ ;
SLOOF, P ;
VANBOOM, JH ;
TROMP, MC .
CELL, 1986, 46 (06) :819-826
[9]  
BOOTHROYD JC, 1982, GENE, V20, P279
[10]   ON THE DNA CONTENT AND PLOIDY OF TRYPANOSOMES [J].
BORST, P ;
VANDERPLOEG, M ;
VANHOEK, JFM ;
TAS, J ;
JAMES, J .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 1982, 6 (01) :13-23