Phylogenetic, structural and functional analyses of the LacI-GalR family of bacterial transcription factors

被引:78
作者
Nguyen, CC [1 ]
Saier, MH [1 ]
机构
[1] UNIV CALIF SAN DIEGO, DEPT BIOL, LA JOLLA, CA 92093 USA
关键词
transcription; regulation; DNA-binding protein; helix-turn-helix motif; evolution; phylogenetic tree;
D O I
10.1016/0014-5793(95)01344-X
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Phylogenetic tree construction for 25 sequenced members of the LacI-GalR family (LGF) of transcription factors revealed that almost all branches are similar in length, radiating essentially from a single point, This observation suggests that most of these proteins arose by duplication events which occurred at a specific time in evolutionary history, and that further duplication events were rare, Analyses of the multiple alignment of the LGF proteins lead to suggestions regarding structure-function relationships and reveal that the helix-turn-helix DNA-binding motif of LGF proteins is similar in sequence to those of numerous non-homologous DNA-binding proteins.
引用
收藏
页码:98 / 102
页数:5
相关论文
共 23 条
[1]   PROSITE - A DICTIONARY OF SITES AND PATTERNS IN PROTEINS [J].
BAIROCH, A .
NUCLEIC ACIDS RESEARCH, 1992, 20 :2013-2018
[2]   CHARACTERIZATION OF A CHROMOSOMALLY ENCODED, NON-PTS METABOLIC PATHWAY FOR SUCROSE UTILIZATION IN ESCHERICHIA-COLI EC3132 [J].
BOCKMANN, J ;
HEUEL, H ;
LENGELER, JW .
MOLECULAR AND GENERAL GENETICS, 1992, 235 (01) :22-32
[3]   Interactions of the helix-turn-helix binding domain [J].
Brennan, Richard G. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1991, 1 (01) :80-88
[4]  
Dayhoff MO, 1978, ATL PROTEIN SEQ STRU, V5, P345
[5]  
DVISON SP, 1995, MICROBIOLOGY, V141, P989
[6]  
FENG DF, 1990, METHOD ENZYMOL, V183, P375
[7]  
FLOCCO MM, 1994, J BIOL CHEM, V269, P8931
[8]   CRYSTAL-STRUCTURE OF LAC REPRESSOR CORE TETRAMER AND ITS IMPLICATIONS FOR DNA LOOPING [J].
FRIEDMAN, AM ;
FISCHMANN, TO ;
STEITZ, TA .
SCIENCE, 1995, 268 (5218) :1721-1727
[9]   DNA RECOGNITION BY PROTEINS WITH THE HELIX-TURN-HELIX MOTIF [J].
HARRISON, SC ;
AGGARWAL, AK .
ANNUAL REVIEW OF BIOCHEMISTRY, 1990, 59 :933-969
[10]  
HSIEH M, 1994, J BIOL CHEM, V269, P13825