NMR CHEMICAL-SHIFTS AND STRUCTURE REFINEMENT IN PROTEINS

被引:43
作者
LAWS, DD [1 ]
DEDIOS, AC [1 ]
OLDFIELD, E [1 ]
机构
[1] UNIV ILLINOIS,DEPT CHEM,505 S MATHEWS AVE,URBANA,IL 61801
关键词
CHEMICAL SHIFT; AB-INITIO; CALMODULIN; STAPHYLOCOCCAL NUCLEASE;
D O I
10.1007/BF00174614
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Computation of the C-13(alpha) chemical shifts (or shieldings) of glycine, alanine and valine residues in bovine and Drosophila calmodulins and Staphylococcal nuclease, and comparison with experimental values, is reported using a gauge-including atomic orbital quantum-chemical approach. The full approximately 24 ppm shielding range is reproduced (overall r.m.s.d. = 1.4 ppm) using 'optimized' protein structures, corrected for bond-length/bond-angle errors, and rovibrational effects.
引用
收藏
页码:607 / 612
页数:6
相关论文
共 27 条
[1]  
BAX A, 1989, ANNU REV BIOCHEM, V58, P223
[2]   CONFORMATION OF CYCLO-BIS(L-VALYL-L-PROLYL-D-ALANYL-), A SYNTHETIC CYCLIC HEXAPEPTIDE [J].
BHANDARY, KK ;
KOPPLE, KD .
ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 1991, 47 :1280-1283
[3]   COMPARISON OF THE NMR SOLUTION STRUCTURE WITH THE X-RAY CRYSTAL-STRUCTURE OF THE ACTIVATION DOMAIN FROM PROCARBOXYPEPTIDASE-B [J].
BILLETER, M ;
VENDRELL, J ;
WIDER, G ;
AVILES, FX ;
COLL, M ;
GUASCH, A ;
HUBER, R ;
WUTHRICH, K .
JOURNAL OF BIOMOLECULAR NMR, 1992, 2 (01) :1-10
[4]   CALMODULIN STRUCTURE REFINED AT 1.7 ANGSTROM RESOLUTION [J].
CHATTOPADHYAYA, R ;
MEADOR, WE ;
MEANS, AR ;
QUIOCHO, FA .
JOURNAL OF MOLECULAR BIOLOGY, 1992, 228 (04) :1177-1192
[5]   LOCALLY DENSE BASIS-SETS FOR CHEMICAL-SHIFT CALCULATIONS [J].
CHESNUT, DB ;
MOORE, KD .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1989, 10 (05) :648-659
[6]   METHODS FOR COMPUTING NUCLEAR-MAGNETIC-RESONANCE CHEMICAL SHIELDING IN LARGE SYSTEMS - MULTIPLE CLUSTER AND CHARGE FIELD APPROACHES [J].
DEDIOS, AC ;
OLDFIELD, E .
CHEMICAL PHYSICS LETTERS, 1993, 205 (01) :108-116
[7]   SECONDARY AND TERTIARY STRUCTURAL EFFECTS ON PROTEIN NMR CHEMICAL-SHIFTS - AN ABINITIO APPROACH [J].
DEDIOS, AC ;
PEARSON, JG ;
OLDFIELD, E .
SCIENCE, 1993, 260 (5113) :1491-1496
[8]   MOLECULAR-ORBITAL THEORY OF MAGNETIC SHIELDING AND MAGNETIC SUSCEPTIBILITY [J].
DITCHFIELD, R .
JOURNAL OF CHEMICAL PHYSICS, 1972, 56 (11) :5688-+
[9]   DIPOLE-MOMENT, MAGNETIZABILITY AND NUCLEAR SHIELDING SURFACES FOR THE WATER MOLECULE [J].
FOWLER, PW ;
RILEY, G ;
RAYNES, WT .
MOLECULAR PHYSICS, 1981, 42 (06) :1463-1481