Flow: Statistics, visualization and informatics for flow cytometry

被引：8

作者：

Frelinger, Jacob ^{[1
]}

Kepler, Thomas B. ^{[2
,3
]}

Chan, Cliburn ^{[2
]}

机构：

[1] Duke Univ, Computat Biol & Bioinformat Program, Durham, NC 27705 USA

[2] Duke Univ, Med Ctr, Dept Biostatist & Bioinformat, 2424 Erwin Rd,Hock Plaza Suite G06, Durham, NC 27705 USA

[3] Duke Univ, Dept Stat Sci, Durham, NC 27705 USA

来源：

SOURCE CODE FOR BIOLOGY AND MEDICINE | 2008年 / 3卷 / 01期

关键词：

D O I：

10.1186/1751-0473-3-10

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Flow is an open source software application for clinical and experimental researchers to perform exploratory data analysis, clustering and annotation of flow cytometric data. Flow is an extensible system that offers the ease of use commonly found in commercial flow cytometry software packages and the statistical power of academic packages like the R BioConductor project.

引用

页数：12

共 14 条

[1] HyperLog - A flexible log-like transform for negative, zero, and positive valued data [J].

Bagwell, CB .

CYTOMETRY PART A, 2005, 64A (01) :34-42

[2] An ontology for cell types [J].

Bard, J ;

Rhee, SY ;

Ashburner, M .

GENOME BIOLOGY, 2005, 6 (02)

[3] Mixture modeling approach to flow cytometry data [J].

Boedigheimer, Michael J. ;

Ferbas, John .

CYTOMETRY PART A, 2008, 73A (05) :421-429

[4] Statistical mixture modeling for cell subtype identification in flow cytometry [J].

Chan, Cliburn ;

Feng, Feng ;

Ottinger, Janet ;

Foster, David ;

West, Mike ;

Kepler, Thomas B. .

CYTOMETRY PART A, 2008, 73A (08) :693-701

[5] Open source clustering software [J].

de Hoon, MJL ;

Imoto, S ;

Nolan, J ;

Miyano, S .

BIOINFORMATICS, 2004, 20 (09) :1453-1454

[6]

Gamma Erich, 1994, DESIGN PATTERNS ELEM

[7] Interpreting flow cytometry data: a guide for the perplexed [J].

Herzenberg, Leonore A. ;

Tung, James ;

Moore, Wayne A. ;

Herzenberg, Leonard A. ;

Parks, David R. .

NATURE IMMUNOLOGY, 2006, 7 (07) :681-685

[8] Automated Gating of flow cytometry data via robust model-based clustering [J].

Lo, Kenneth ;

Brinkman, Ryan Remy ;

Gottardo, Raphael .

CYTOMETRY PART A, 2008, 73A (04) :321-332

[9] A new "Logicle" display method avoids deceptive effects of logarithmic scaling for low signals and compensated data [J].

Parks, David R. ;

Roederer, Mario ;

Moore, Wayne A. .

CYTOMETRY PART A, 2006, 69A (06) :541-551

[10] Innovation - Seventeen-colour flow cytometry: unravelling the immune system [J].

Perfetto, SP ;

Chattopadhyay, PK ;

Roederer, M .

NATURE REVIEWS IMMUNOLOGY, 2004, 4 (08) :648-U5

← 1 2 →