CHARACTERIZATION OF THE EXTENT OF INTERNAL MOTIONS IN OLIGOSACCHARIDES

被引:91
作者
RUTHERFORD, TJ [1 ]
PARTRIDGE, J [1 ]
WELLER, CT [1 ]
HOMANS, SW [1 ]
机构
[1] UNIV DUNDEE,DEPT BIOCHEM,DUNDEE DD1 4HN,SCOTLAND
关键词
D O I
10.1021/bi00210a021
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A detailed investigation has been undertaken on the extent and nature of torsional fluctuations about the glycosidic linkage of the model disaccharide Manalpha1-3Manalpha1-OMe. In particular, we sought to determine whether the three nuclear Overhauser effects and the two long-range heteronuclear 3J(CH) spin coupling constants measurable across the glycosidic linkage were consistent with a single conformation or multiple conformations about that linkage. Within experimental error, we have found that these five parameters can be interpreted in terms of a single, rigid geometry. Alternatively, the data are also consistent with a model in which the glycosidic torsional angles exhibit significant but restricted fluctuations about the global minimum energy conformation. Evidence from restrained molecular dynamics simulations both in vacuo and with explicit inclusion of solvent water and from C-13 relaxation measurements upon an oligomannose glycan in covalent association with protein suggests that the latter model is the most accurate representation of the conformational behavior of oligosaccharides in solution.
引用
收藏
页码:12715 / 12724
页数:10
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