THE UNUSUAL STRUCTURE OF THE HUMAN CENTROMERE (GGA)(2) MOTIF - UNPAIRED GUANOSINE RESIDUES STACKED BETWEEN SHEARED G-CENTER-DOT-A PAIRS

被引:56
作者
CHOU, SH [1 ]
ZHU, LM [1 ]
REID, BR [1 ]
机构
[1] UNIV WASHINGTON, DEPT CHEM, SEATTLE, WA 98195 USA
关键词
SHEARED G-CENTER-DOT-A PAIRS; UNPAIRED G-STACKS; NMR; CENTROMERE; DNA REPEAT;
D O I
10.1006/jmbi.1994.1727
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The centromere of human chromosomes contains multiple repeats of the DNA sequence d(TGGAA)(n). This sequence has the interesting property of pairing with itself to form stable duplexes. We have determined the solution structure of the unusual DNA duplex 5'-TGGAATGGAA:TGGAATGGAA-3' at atomic resolution. The duplex contains unpaired staggered guanosine residues, which co-stack by intercalation between sheared G(.)A and A(.)G base-pairs to form an interesting new structural motif. the GA-bracketed G-stack. The TGGAA repeat unit contains six ''steps'', four of which are not Watson-Crick base-pairs.
引用
收藏
页码:259 / 268
页数:10
相关论文
共 36 条
  • [1] HUMAN TELOMERIC C-STRAND TETRAPLEXES
    AHMED, S
    KINTANAR, A
    HENDERSON, E
    [J]. NATURE STRUCTURAL BIOLOGY, 1994, 1 (02): : 83 - 88
  • [2] SURVEY OF HUMAN AND RAT MICROSATELLITES
    BECKMANN, JS
    WEBER, JL
    [J]. GENOMICS, 1992, 12 (04) : 627 - 631
  • [3] STRUCTURE AND FUNCTION OF TELOMERES
    BLACKBURN, EH
    [J]. NATURE, 1991, 350 (6319) : 569 - 573
  • [4] CARBON J, 1990, New Biologist, V2, P10
  • [5] UNUSUAL STRUCTURES OF THE TANDEM REPETITIVE DNA-SEQUENCES LOCATED AT HUMAN CENTROMERES
    CATASTI, P
    GUPTA, G
    GARCIA, AE
    RATLIFF, R
    HONG, L
    YAU, P
    MOYZIS, RK
    BRADBURY, EM
    [J]. BIOCHEMISTRY, 1994, 33 (13) : 3819 - 3830
  • [6] BASE-PAIRING GEOMETRY IN GA MISMATCHES DEPENDS ENTIRELY ON THE NEIGHBORING SEQUENCE
    CHENG, JW
    CHOU, SH
    REID, BR
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1992, 228 (04) : 1037 - 1041
  • [7] ADJACENT G-A MISMATCH BASE-PAIRS CONTAIN B(II) PHOSPHODIESTERS IN SOLUTION
    CHOU, SH
    CHENG, JW
    FEDOROFF, OY
    CHUPRINA, VP
    REID, BR
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (08) : 3114 - 3115
  • [8] SOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2 - ADJACENT G-A MISMATCHES STABILIZED BY CROSS-STRAND BASE-STACKING AND B(II) PHOSPHATE GROUPS
    CHOU, SH
    CHENG, JW
    REID, BR
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1992, 228 (01) : 138 - 155
  • [9] DNA-SEQUENCE GCGAATGAGC CONTAINING THE HUMAN CENTROMERE CORE SEQUENCE GAAT FORMS A SELF-COMPLEMENTARY DUPLEX WITH SHEARED G-CENTER-DOT-A PAIRS IN SOLUTION
    CHOU, SH
    CHENG, JW
    FEDOROFF, O
    REID, BR
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1994, 241 (03) : 467 - 479
  • [10] MOLECULAR-STRUCTURE OF CYCLIC DEOXYDIADENYLIC ACID AT ATOMIC RESOLUTION
    FREDERICK, CA
    COLL, M
    VANDERMAREL, GA
    VANBOOM, JH
    WANG, AHJ
    [J]. BIOCHEMISTRY, 1988, 27 (22) : 8350 - 8361