HETEROGENEOUS DIFFUSION OF WATER AT PROTEIN SURFACES - APPLICATION TO BPTI

被引:35
作者
KNAPP, EW
MUEGGE, I
机构
[1] Fachbereich Chemie, Institut für Kristallographie, Freie Universität Berlin, D 14195 Berlin
关键词
D O I
10.1021/j100145a036
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The influence of the protein surface on the dynamics of water is investigated by a computer simulation of the dynamics of bovine pancreatic trypsin inhibitor (BPTI) in water for 500 ps. The diffusion constant for water moving away from the protein surface has been determined by comparing computer simulation data with those of an analytical model. For 75% of the surface waters, the diffusion off the protein surface is a factor of 4 slower, but for the other 25%, the diffusion is a factor of 15 faster than in bulk water.
引用
收藏
页码:11339 / 11343
页数:5
相关论文
共 28 条
[21]   PROTON-EXCHANGE WITH INTERNAL WATER-MOLECULES IN THE PROTEIN BPTI IN AQUEOUS-SOLUTION [J].
OTTING, G ;
LIEPINSH, E ;
WUTHRICH, K .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1991, 113 (11) :4363-4364
[22]   STUDIES OF PROTEIN HYDRATION IN AQUEOUS-SOLUTION BY DIRECT NMR OBSERVATION OF INDIVIDUAL PROTEIN-BOUND WATER-MOLECULES [J].
OTTING, G ;
WUTHRICH, K .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (05) :1871-1875
[23]   NUMERICAL-INTEGRATION OF CARTESIAN EQUATIONS OF MOTION OF A SYSTEM WITH CONSTRAINTS - MOLECULAR-DYNAMICS OF N-ALKANES [J].
RYCKAERT, JP ;
CICCOTTI, G ;
BERENDSEN, HJC .
JOURNAL OF COMPUTATIONAL PHYSICS, 1977, 23 (03) :327-341
[24]  
SAENGER W, 1987, ANNU REV BIOPHYS BIO, V16, P93
[25]  
VANGUNSTEREN WF, 1983, P NATL ACAD SCI-BIOL, V80, P4315
[27]   PROTON NMR-STUDIES OF AROMATIC RESIDUES IN BASIC PANCREATIC TRYPSIN-INHIBITOR (BPTI) [J].
WAGNER, G ;
WUTHRICH, K .
JOURNAL OF MAGNETIC RESONANCE, 1975, 20 (03) :435-445
[28]   STRUCTURE OF BOVINE PANCREATIC TRYPSIN-INHIBITOR - RESULTS OF JOINT NEUTRON AND X-RAY REFINEMENT OF CRYSTAL FORM-II [J].
WLODAWER, A ;
WALTER, J ;
HUBER, R ;
SJOLIN, L .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 180 (02) :301-329