Direct phasing at low resolution of a protein copurified with human paraoxonase (PON1)

被引:27
作者
Fokine, A
Morales, R
Contreras-Martel, C
Carpentier, P
Renault, F
Rochu, D
Chabriere, E
机构
[1] Univ Nancy 1, CNRS, UMR 7036, Lab Cristallog & Modelisat Mat Mineraux & Biol, F-54506 Vandoeuvre Les Nancy, France
[2] Univ Grenoble 1, CNRS, CEA,Inst Biol Struct Jean Pierre Ebel, Cristallog & Cristallogenese Prot Lab, F-38027 Grenoble 1, France
[3] Serv Sante Armees, Ctr Rech, Unite Enzymol, F-38702 La Tronche, France
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 2003年 / 59卷
关键词
D O I
10.1107/S0907444903017682
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this paper, the low-resolution structure of a previously unknown protein copurified with human paraoxonase (PON1) is reported. The structure of this protein was very difficult to solve using classical crystallographic methods. Progress was made using a new phasing method based on topological analysis. From the experimental point of view, this method has the advantage of requiring only a simple low-resolution X-ray data set. The program used and the different steps of the dataprocessing and phasing procedure are described. The results provided an insight into the failure of previous molecular-replacement attempts. The low-resolution shape of the protein which was presented with confidence is compared with and confirmed by the structure at 1.8 Angstrom solved subsequently using classical methods. This work shows that this direct-phasing method could be used systematically in difficult cases: it provides low-resolution structural information comparable with that obtainable by electron microscopy.
引用
收藏
页码:2083 / 2087
页数:5
相关论文
共 29 条
[1]   3-DIMENSIONAL STRUCTURE OF THE BINUCLEAR METAL CENTER OF PHOSPHOTRIESTERASE [J].
BENNING, MM ;
KUO, JM ;
RAUSHEL, FM ;
HOLDEN, HM .
BIOCHEMISTRY, 1995, 34 (25) :7973-7978
[2]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[3]  
CHABRIERE E, 2000, P US ARM MED DEF BIO
[4]  
CHABRIERE E, 2001, 20 EUR CRYST M ECM20
[5]   SERUM PARAOXONASE AND ITS INFLUENCE ON PARAOXON AND CHLORPYRIFOS-OXON TOXICITY IN RATS [J].
COSTA, LG ;
MCDONALD, BE ;
MURPHY, SD ;
OMENN, GS ;
RICHTER, RJ ;
MOTULSKY, AG ;
FURLONG, CE .
TOXICOLOGY AND APPLIED PHARMACOLOGY, 1990, 103 (01) :66-76
[6]  
COSTA LG, 1987, ATI ASU SER, V13, P263
[7]   BULK SOLVENT AND ITS ROLE IN MACROMOLECULAR PHASING [J].
Fokine, A. ;
Lununa, N. ;
Lunin, V. Y. ;
Urzhumtsev, A. .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2002, 58 :C267-C267
[8]   Flat bulk-solvent model: obtaining optimal parameters [J].
Fokine, A ;
Urzhumtsev, A .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1387-1392
[9]  
GAN KN, 1991, DRUG METAB DISPOS, V19, P100
[10]   PON1 and low-dose sarin in marmosets [J].
Haley, RW .
JOURNAL OF PSYCHOPHARMACOLOGY, 2000, 14 (01) :87-87