DIRECT SELECTION OF CDNAS USING WHOLE CHROMOSOMES

被引:12
作者
ROUQUIER, S
TRASK, BJ
TAVIAUX, S
VANDENENGH, G
DIRIONG, S
LENNON, GG
GIORGI, D
机构
[1] CTR RECH BIOCHIM MACROMOLEC,CNRS,UPR 9008,F-34033 MONTPELLIER,FRANCE
[2] UNIV WASHINGTON,DEPT MOLEC BIOTECHNOL FJ20,SEATTLE,WA 98195
[3] LAWRENCE LIVERMORE NATL LAB,LIVERMORE,CA 94551
关键词
D O I
10.1093/nar/23.21.4415
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have developed a method for direct selection of cDNAs using whole chromosomes as target DNA. Double-strand cDNAs were synthesized from human fetal brain polyadenylated mRNAs. Flow-sorted chromosomes 17 and 19 were amplified by degenerate oligonucleotide primed polymerase chain reaction (DOP-PCR) and used to capture ds cDNAs by an improved magnetic bead capture protocol. To demonstrate the capabilities of this method, the selected cDNAs were used as probes in FISH experiments. The selected cDNA populations specifically painted chromosomes 17 or 19 on metaphase spreads. These results demonstrate that it is possible to do chromosome painting using cDNA probes and that this method is a means to rapidly select expressed sequences encoded by any portion of the genome.
引用
收藏
页码:4415 / 4420
页数:6
相关论文
共 36 条
[1]   CPG ISLANDS AS GENE MARKERS IN THE VERTEBRATE NUCLEUS [J].
BIRD, AP .
TRENDS IN GENETICS, 1987, 3 (12) :342-347
[2]   CLONING THE SHARED COMPONENTS OF COMPLEX DNA RESOURCES [J].
BROOKES, AJ ;
SLORACH, EM ;
MORRISON, KE ;
QURESHI, SJ ;
BLAKE, D ;
DAVIES, K ;
PORTEOUS, DJ .
HUMAN MOLECULAR GENETICS, 1994, 3 (11) :2011-2017
[3]  
BROOKES AJ, 1991, NUCLEIC ACIDS RES, V19, P2609
[4]   EXON AMPLIFICATION - A STRATEGY TO ISOLATE MAMMALIAN GENES BASED ON RNA SPLICING [J].
BUCKLER, AJ ;
CHANG, DD ;
GRAW, SL ;
BROOK, JD ;
HABER, DA ;
SHARP, PA ;
HOUSMAN, DE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (09) :4005-4009
[5]   DIRECT CLONING OF HUMAN TRANSCRIPTS WITH HNRNA FROM HYBRID CELL-LINES [J].
CORBO, L ;
MALEY, JA ;
NELSON, DL ;
CASKEY, CT .
SCIENCE, 1990, 249 (4969) :652-655
[6]   IDENTIFICATION OF TISSUE-SPECIFIC EXPRESSED SEQUENCES IN HUMAN BAND XQ28 WITH COMPLEX PIG CDNA PROBES [J].
COY, JF ;
KIOSCHIS, P ;
SEDLACEK, Z ;
POUSTKA, A .
MAMMALIAN GENOME, 1994, 5 (03) :131-137
[7]   THE DISTRIBUTION OF CPG ISLANDS IN MAMMALIAN CHROMOSOMES [J].
CRAIG, JM ;
BICKMORE, WA .
NATURE GENETICS, 1994, 7 (03) :376-382
[8]   EXON TRAPPING - A GENETIC SCREEN TO IDENTIFY CANDIDATE TRANSCRIBED SEQUENCES IN CLONED MAMMALIAN GENOMIC DNA [J].
DUYK, GM ;
KIM, SW ;
MYERS, RM ;
COX, DR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (22) :8995-8999
[9]  
ELVIN P, 1990, NUCLEIC ACIDS RES, V18, P3910
[10]   HOW MANY GENES IN THE HUMAN GENOME [J].
FIELDS, C ;
ADAMS, MD ;
WHITE, O ;
VENTER, JC .
NATURE GENETICS, 1994, 7 (03) :345-346