The ventricular sulcal pattern and the cellular structure of the brain stem of the lungfish Lepidosiren paradoxa have been studied in transversely cut Nissl and Bodian stained sections. Five longitudinal sulci, the sulcus medianus inferior, the sulcus intermedius ventralis, the sulcus limitans, the sulcus intermedius dorsalis and the sulcus medianus superior could be distinguished. In the isthmus region a number of obliquely oriented sulci is present. One of these, designated here as sulcus d, continues as a longitudinal groove into the mesencephalon. In Lepidosiren most neuronal perikarya are contained within a diffuse periventricular gray. However, 24 separate cell masses could be delineated. Six of these are primary efferent nuclei, six are primary afferent centers, six nuclei are considered to be components of the reticular formation and the remaining six may be interpreted as “relay” nuclei. The distribution of the cell masses and their relations to the ventricular sulci were studied with the aid of the graphical reconstruction procedure termed topological analysis (cf. Nieuwenhuys, 1974, and fig. 11). This analysis yielded the following results. In the rhombencephalon the gray matter is arranged in four longitudinal columns or areas which have been termed the area ventralis, area intermedioventralis, area intermediodorsalis and area dorsalis. In many places the sulcus intermedius ventralis, the sulcus limitans and the sulcus intermedius dorsalis mark the boundaries between these morphological entities. These longitudinal areas coincide largely, but not entirely, with the so‐called functional columns of Herrick and Johnston. The most obvious incongruity is that the area intermediodorsalis contains, in addition to the nucleus of the solitary tract, two non‐visceral sensory cell masses, namely the magnocellular and parvocellular vestibular nuclei. The four longitudinal zones connot be distinguished in the mesencephalon nor can the sulcus limitans be recognized here. Functionally, however, the medial part of the tegmentum mesencephali may be considered the rostral extreme of the somatic motor column, whereas the remainder of the midbrain contains a number of somatic sensory centers. Copyright © 1979 The Wistar Institute Press