A RANDOM-WALK GIANT-LOOP MODEL FOR INTERPHASE CHROMOSOMES

被引:259
作者
SACHS, RK
VANDENENGH, G
TRASK, B
YOKOTA, H
HEARST, JE
机构
[1] UNIV CALIF BERKELEY,DEPT CHEM,BERKELEY,CA 94720
[2] UNIV WASHINGTON,DEPT MOLEC BIOTECHNOL,SEATTLE,WA 98195
关键词
CHROMATIN; FLUORESCENT IN SITU HYBRIDIZATION; CELL NUCLEUS ULTRASTRUCTURE; POLYMERS;
D O I
10.1073/pnas.92.7.2710
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Fluorescence in situ hybridization data on distances between defined genomic sequences are used to construct a quantitative model for the overall geometric structure of a human chromosome. We suggest that the large-scale geometry during the G(0)/G(1) part of the cell cycle may consist of flexible chromatin loops, averaging approximate to 3 million bp, with a random-walk backbone. A fully explicit, three-parametric polymer model of this random-walk/giant-loop structure can account well for the data, More general models consistent with the data are briefly discussed.
引用
收藏
页码:2710 / 2714
页数:5
相关论文
共 17 条
[11]   DELINEATION OF INDIVIDUAL HUMAN-CHROMOSOMES IN METAPHASE AND INTERPHASE CELLS BY INSITU SUPPRESSION HYBRIDIZATION USING RECOMBINANT DNA LIBRARIES [J].
LICHTER, P ;
CREMER, T ;
BORDEN, J ;
MANUELIDIS, L ;
WARD, DC .
HUMAN GENETICS, 1988, 80 (03) :224-234
[12]   THE 30 NM CHROMATIN FIBER AS A FLEXIBLE POLYMER [J].
OSTASHEVSKY, JY ;
LANGE, CS .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1994, 11 (04) :813-820
[13]   INTERCHANGE AND INTRA-NUCLEAR ARCHITECTURE [J].
SAVAGE, JRK .
ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, 1993, 22 (04) :234-244
[14]  
TRIVEDI KS, 1982, PROBABILITY STATISTI
[15]  
TSANER R, 1993, REPLICATION TRANSCRI
[16]  
van Holde K. E, 1989, CHROMATIN
[17]   ESTIMATING GENOMIC DISTANCE FROM DNA-SEQUENCE LOCATION IN CELL-NUCLEI BY A RANDOM-WALK MODEL [J].
VANDENENGH, G ;
SACHS, R ;
TRASK, BJ .
SCIENCE, 1992, 257 (5075) :1410-1412