Plant microRNAs: new players in functional genomics

被引:65
作者
Eldem, Vahap [1 ,2 ]
Okay, Sezer [1 ]
Unver, Turgay [1 ]
机构
[1] Cankiri Karatekin Univ, Fac Sci, Dept Biol, Ballica, Cankiri, Turkey
[2] Istanbul Univ, Fac Sci, Dept Biol, Istanbul, Turkey
关键词
High-throughput next generation sequencing; plant development; stress response; IN-SITU HYBRIDIZATION; LOCKED NUCLEIC-ACID; STRESS-RESPONSIVE MICRORNAS; MICROARRAY-BASED ANALYSIS; VEGETATIVE PHASE-CHANGE; MERISTEM CELL FATE; SMALL RNA DUPLEXES; GENE-EXPRESSION; MESSENGER-RNA; TRANSCRIPTION FACTOR;
D O I
10.3906/tar-1206-50
中图分类号
S [农业科学];
学科分类号
09 ;
摘要
MicroRNAs (miRNAs) are small, endogenously expressed, and nonprotein coding RNAs that regulate gene expression via post-transcriptional inhibition and cleavage. To date, several plant miRNAs have been identified via direct cloning, high-throughput sequencing, and bioinformatics analyses. The miRNAs participate in RNA-induced gene silencing complex, and specifically repress the target gene transcripts. Thus, miRNAs regulate the expression of genes playing diverse roles in plants, such as root initiation, leaf morphology, flower development, and response to environmental stimuli. A number of miRNAs have been identified and functionally characterized in eukaryotes. In this review, we discuss the functional roles of miRNAs in plant development as well as stress response to biotic and abiotic environmental factors. Additionally, we present brief information about miRNA detection and discovery techniques.
引用
收藏
页码:1 / 21
页数:21
相关论文
共 231 条
[11]   Vive la difference: biogenesis and evolution of microRNAs in plants and animals [J].
Axtell, Michael J. ;
Westholm, Jakub O. ;
Lai, Eric C. .
GENOME BIOLOGY, 2011, 12 (04)
[12]   The early extra petals1 mutant uncovers a role for MicroRNA miR164c in regulating petal number in Arabidopsis [J].
Baker, CC ;
Sieber, P ;
Wellmer, F ;
Meyerowitz, EM .
CURRENT BIOLOGY, 2005, 15 (04) :303-315
[13]   Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers [J].
Balcells, Ingrid ;
Cirera, Susanna ;
Busk, Peter K. .
BMC BIOTECHNOLOGY, 2011, 11
[14]   Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes [J].
Barrera-Figueroa, Blanca E. ;
Gao, Lei ;
Diop, Ndeye N. ;
Wu, Zhigang ;
Ehlers, Jeffrey D. ;
Roberts, Philip A. ;
Close, Timothy J. ;
Zhu, Jian-Kang ;
Liu, Renyi .
BMC PLANT BIOLOGY, 2011, 11
[15]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[16]   Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits rnicroRNAs and short interfering RNAs [J].
Baumberger, N ;
Baulcombe, DC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (33) :11928-11933
[17]   mRNA and microRNA quality control for RT-qPCR analysis [J].
Becker, C. ;
Hammerle-Fickinger, A. ;
Riedmaier, I. ;
Pfaffl, M. W. .
METHODS, 2010, 50 (04) :237-243
[18]   Not a peripheral issue: secretion in plant-microbe interactions [J].
Bednarek, Pawel ;
Kwon, Chian ;
Schulze-Lefert, Paul .
CURRENT OPINION IN PLANT BIOLOGY, 2010, 13 (04) :378-387
[19]   Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available [J].
Benes, Vladimir ;
Castoldi, Mirco .
METHODS, 2010, 50 (04) :244-249
[20]   HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis [J].
Bollman, KM ;
Aukerman, MJ ;
Park, MY ;
Hunter, C ;
Berardini, TZ ;
Poethig, RS .
DEVELOPMENT, 2003, 130 (08) :1493-1504