A toolkit for analysing large-scale plant small RNA datasets

被引：211

作者：

Moxon, Simon ^{[1
]}

Schwach, Frank ^{[1
]}

Dalmay, Tamas ^{[2
]}

MacLean, Dan ^{[3
]}

Studholme, David J. ^{[3
]}

Moulton, Vincent ^{[1
]}

机构：

[1] Univ E Anglia, Sch Comp Sci, Norwich NR4 7TJ, Norfolk, England

[2] Univ E Anglia, Sch Biol Sci, Norwich NR4 7TJ, Norfolk, England

[3] Sainsbury Lab, Norwich NR4 7UH, Norfolk, England

来源：

BIOINFORMATICS | 2008年 / 24卷 / 19期

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btn428

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

引用

页码：2252 / 2253

页数：2

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