Genome dynamics during experimental evolution

被引：450

作者：

Barrick, Jeffrey E. ^{[1
,2
]}

Lenski, Richard E. ^{[2
,3
]}

机构：

[1] Univ Texas Austin, Dept Mol Biosci, Inst Cellular & Mol Biol, Austin, TX 78712 USA

[2] Michigan State Univ, BEACON Ctr Study Evolut Act, E Lansing, MI 48824 USA

[3] Michigan State Univ, Dept Microbiol & Mol Genet, E Lansing, MI 48824 USA

来源：

NATURE REVIEWS GENETICS | 2013年 / 14卷 / 12期

基金：

美国国家科学基金会; 美国国家卫生研究院;

关键词：

LONG-TERM EXPERIMENT; ESCHERICHIA-COLI K-12; SPONTANEOUS MUTATION ACCUMULATION; BENEFICIAL MUTATIONS; CLONAL INTERFERENCE; ASEXUAL POPULATIONS; KEY INNOVATION; DROSOPHILA-MELANOGASTER; BACTERIAL POPULATION; MOLECULAR-SPECTRUM;

D O I：

10.1038/nrg3564

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Evolutionary changes in organismal traits may occur either gradually or suddenly. However, until recently, there has been little direct information about how phenotypic changes are related to the rate and the nature of the underlying genotypic changes. Technological advances that facilitate whole-genome and whole-population sequencing, coupled with experiments that 'watch' evolution in action, have brought new precision to and insights into studies of mutation rates and genome evolution. In this Review, we discuss the evolutionary forces and ecological processes that govern genome dynamics in various laboratory systems in the context of relevant population genetic theory, and we relate these findings to evolution in natural populations.

引用

页码：827 / 839

页数：13

共 107 条

[91] Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E-coli B and K-12 Genomes [J].

Studier, F. William ;

Daegelen, Patrick ;

Lenski, Richard E. ;

Maslov, Sergei ;

Kim, Jihyun F. .

JOURNAL OF MOLECULAR BIOLOGY, 2009, 394 (04) :653-680

[92] Drift-barrier hypothesis and mutation-rate evolution [J].

Sung, Way ;

Ackerman, Matthew S. ;

Miller, Samuel F. ;

Doak, Thomas G. ;

Lynch, Michael .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (45) :18488-18492

[93] The Molecular Diversity of Adaptive Convergence [J].

Tenaillon, Olivier ;

Rodriguez-Verdugo, Alejandra ;

Gaut, Rebecca L. ;

McDonald, Pamela ;

Bennett, Albert F. ;

Long, Anthony D. ;

Gaut, Brandon S. .

SCIENCE, 2012, 335 (6067) :457-461

[94] Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections [J].

Traverse, Charles C. ;

Mayo-Smith, Leslie M. ;

Poltak, Steffen R. ;

Cooper, Vaughn S. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (03) :E250-E259

[95] Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli [J].

Treves, DS ;

Manning, S ;

Adams, J .

MOLECULAR BIOLOGY AND EVOLUTION, 1998, 15 (07) :789-797

[96] Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor [J].

Velicer, Gregory J. ;

Raddatz, Guenter ;

Keller, Heike ;

Deiss, Silvia ;

Lanz, Christa ;

Dinkelacker, Iris ;

Schuster, Stephan C. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (21) :8107-8112

[97]

Wagner A, 2011, ORIGINS OF EVOLUTIONARY INNOVATIONS: A THEORY OF TRANSFORMATIVE CHANGE IN LIVING SYSTEMS, P1, DOI 10.1093/acprof:oso/9780199692590.001.0001

[98] OPINION Neutralism and selectionism: a network-based reconciliation [J].

Wagner, Andreas .

NATURE REVIEWS GENETICS, 2008, 9 (12) :965-974

[99] Different trajectories of parallel evolution during viral adaptation [J].

Wichman, HA ;

Badgett, MR ;

Scott, LA ;

Boulianne, CM ;

Bull, JJ .

SCIENCE, 1999, 285 (5426) :422-424

[100] Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load [J].

Wielgoss, Sebastien ;

Barrick, Jeffrey E. ;

Tenaillon, Olivier ;

Wiser, Michael J. ;

Dittmar, W. James ;

Cruveiller, Stephane ;

Chane-Woon-Ming, Beatrice ;

Medigue, Claudine ;

Lenski, Richard E. ;

Schneider, Dominique .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (01) :222-227

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